Sequence of DPV Cardamom mosaic virus

Cardamom mosaic virus partial gene for polyprotein genomic RNA

ACC No: AJ550379

Dated: 2003-03-19 | Length: 1722 | CRC: 535095542

                !!NA_SEQUENCE 1.0
ID   CMO550379  standard; RNA; VRL; 1722 BP.
XX
AC   AJ550379;
XX
SV   AJ550379.1
XX
DT   19-MAR-2003 (Rel. 75, Created)
DT   19-MAR-2003 (Rel. 75, Last updated, Version 1)
XX
DE   Cardamom mosaic virus partial gene for polyprotein genomic RNA
XX
KW   6K2; CI; polyprotein.
XX
OS   Cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus; Maclura mosaic virus.
XX
RN   [1]
RP   1-1722
RA   Usha R.;
RT   ;
RL   Submitted (18-MAR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL   Madurai, Tamil Nadu-625021, INDIA.
XX
RN   [2]
RA   Jebasingh T., Jacob T., Usha R.;
RT   "Characterization of the NIa gene of the Indian isolate of cardamom mosaic
RT   virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1722
FT                   /country="India:Karnataka, Yeslur"
FT                   /db_xref="taxon:104637"
FT                   /mol_type="genomic RNA"
FT                   /note="infected cardamom leaves"
FT                   /virion
FT                   /organism="Cardamom mosaic virus"
FT                   /isolate="Yeslur"
FT                   /specific_host="Elettaria cardamomum"
FT   CDS             <1. .>1722
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAD79434.1"
FT                   /translation="FASSTFQHEGKVQNGDMSIQVMTYGTAFFKAMSADTFIQQFDAVF
FT                   LDESHLITAHSLALESYLNRCVSIRKFYMSATPRNHVPTAAVVRRFQIFEHAQPEVSIE
FT                   AFISSIGKGDSLDALNYGEKVLIFLSGREQCNRAAVKTAATQYGIRAFSLHKENFQSNY
FT                   SKILDALAAPGRCYIYATNILETGVTLNVDVVVDFGYTNQPKLNLTERTLLLEKRRVTE
FT                   AERKQRVGRAGRLRDGHAIVLGKTCQAVEMVTPDVVFDAALLAFVYNLEIYVNAHLDCE
FT                   WLAAITREQARTMLNFRLSSLFHARFSQASNKDYQQWNRLDHYTLTNFCAENSQAFGEI
FT                   SHIRVPFITHDMLDFDLIEISKAVANYKPNMLTVFGSKPAKGISLVMKVDETNVFDTLR
FT                   VARLLKRDYENQILSKKTAISTQRESPISYLLSTRIVDDLTAKLTQQIQKAERNIKKLD
FT                   GFITNLEVYANAPSSGEATTIGQGDYEEIGRCMQLQMDGKLTRESMIESLQLEDIPNAS
FT                   LKDAILLGNKRSILALSFLACGAFAGLAWYLTWDDADGLNNGWNKKQRVTVHKEILE"
FT   mat_peptide     <1. .1482
FT                   /product="CI"
FT   mat_peptide     1483. .>1722
FT                   /product="putative 6K2"
XX
SQ   Sequence 1722 BP; 524 A; 351 C; 376 G; 471 T; 0 other;

 AJ550379  Length: 1722  April 1, 2003 09:32  Type: N  Check: 6935  ..

       1  ttcgcaagtt ctacgtttca gcatgaaggc aaggtgcaga acggggacat
      51  gagtattcaa gttatgacat atggcacagc cttctttaaa gcaatgtcag
     101  ctgacacatt tatccaacaa tttgatgcag ttttccttga cgagtcccat
     151  cttattactg cgcatagtct cgccttggaa tcgtatttaa acagatgtgt
     201  ctcaatacga aaattttata tgtctgccac gccacgcaac cacgttccca
     251  cagccgcagt cgtcaggcgc ttccagattt ttgaacatgc ccagcctgaa
     301  gttagtatcg aagcttttat ttcatcgatt ggaaagggcg acagtctcga
     351  tgcactgaat tacggagaaa aagttcttat ctttttatct gggcgcgagc
     401  aatgcaatcg cgccgcagta aagacagctg cgacccagta tggaatacgt
     451  gctttttctt tacataagga aaactttcaa tcaaattatt ccaaaattct
     501  tgatgcttta gcagcccccg gaaggtgtta tatatatgcc acaaatattc
     551  tggaaactgg agtgactctt aacgtcgatg tcgttgtcga ttttggatac
     601  acaaaccagc caaagcttaa tctaactgag cgtacactgc tccttgagaa
     651  acgacgcgta acggaagctg agcggaagca aagagtcggt cgcgcagggc
     701  gtttacgtga tgggcatgcc attgttcttg gaaaaacatg ccaagctgtg
     751  gaaatggtga cgccagacgt tgtttttgac gcggcactct tagcttttgt
     801  ttataatctc gaaatttatg tcaatgcaca tctggattgc gaatggttgg
     851  ctgccataac gcgtgaacaa gcacggacaa tgctaaactt tcgtttgtca
     901  agtctttttc atgcgcgatt tagtcaggca agcaacaaag attatcaaca
     951  atggaacaga cttgaccact atactctcac aaacttttgt gctgaaaatt
    1001  cacaagcatt tggggaaatt agtcatattc gagttccttt cataactcat
    1051  gacatgctgg attttgattt aattgagata tctaaggctg ttgcgaacta
    1101  caaaccaaat atgttgacag tctttggctc caaacctgca aaaggaatta
    1151  gtttagttat gaaagtggat gaaacaaacg tctttgatac gttgagagtt
    1201  gcacgtttgt taaaacgcga ttatgaaaat caaatattaa gtaagaaaac
    1251  cgcaataagc acacagcggg agtcaccaat ctcctatttg ctttccacaa
    1301  ggattgtcga tgatttgaca gccaaattaa cccagcagat acagaaggca
    1351  gaacgtaaca taaagaagct ggatggcttc atcacaaatc ttgaagtgta
    1401  tgcaaatgca ccatcatcag gcgaagcaac aacaattggt caaggtgatt
    1451  acgaagagat aggtcggtgc atgcaattgc agatggatgg caagttaact
    1501  cgtgaaagca tgatagagag tcttcaactt gaagatatcc caaatgcgtc
    1551  tctcaaagat gccattctac tgggtaataa aagatcaatt cttgcgttgt
    1601  cctttctagc atgtggtgct ttcgcaggac tagcatggta tctgacatgg
    1651  gatgatgccg acggtttaaa caatggctgg aacaagaaac aacgagtcac
    1701  tgtacacaaa gaaattcttg ag