Sequence of DPV Plum pox virus

Plum pox virus partial gene for polyprotein, genomic RNA, strain M1, isolate Bt-H2-blackthorn

ACC No: AJ566346

Dated: 2004-08-18 | Length: 1826 | CRC: 336251495

                !!NA_SEQUENCE 1.0
ID   PPO566346  standard; genomic RNA; VRL; 1826 BP.
XX
AC   AJ566346;
XX
SV   AJ566346.1
XX
DT   12-JUN-2003 (Rel. 76, Created)
DT   18-AUG-2004 (Rel. 80, Last updated, Version 3)
XX
DE   Plum pox virus partial gene for polyprotein, genomic RNA, strain M1,
DE   isolate Bt-H2-blackthorn
XX
KW   coat protein, CP; NIb protein; polyprotein.
XX
OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1826
RA   Palkovics L.;
RT   ;
RL   Submitted (10-JUN-2003) to the EMBL/GenBank/DDBJ databases.
RL   Palkovics L., Environmental Biosafety Research Inst., Agricultural
RL   Biotechnology Center, PO Box: 411, H-2101, HUNGARY.
XX
RN   [2]
RX   PUBMED; 15302961.
RA   Glasa M., Palkovics L., Kominek P., Labonne G., Pittnerova S., Kudela O.,
RA   Candresse T., Subr Z.;
RT   "Geographically and temporally distant natural recombinant isolates of Plum
RT   pox virus (PPV) are genetically very similar and form a unique PPV
RT   subgroup";
RL   J. Gen. Virol. 85(Pt 9):2671-2681(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1826
FT                   /country="Hungary:Godollo"
FT                   /db_xref="taxon:12211"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Plum pox virus"
FT                   /clone="Bt-H2/13/3/2002"
FT                   /isolate="Bt-H2-blackthorn"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /strain="M1"
FT                   /specific_host="Prunus spinosa"
FT   CDS             <1. .1609
FT                   /codon_start=2
FT                   /db_xref="UniProt/TrEMBL:Q7TEX0"
FT                   /product="polyprotein"
FT                   /protein_id="CAD97434.1"
FT                   /translation="STVVDNTLMVILAMTYSLLKLGYHPDTHDCICRYFVNGDDLVLAV
FT                   HPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVLYDGMYIPKLEPERIVS
FT                   ILEWDRSNEPIHRLEAICASMVEAWGYKELLREIRKFYSWVLEQAPYNALSKDGKAPYI
FT                   AETALKKLYTDSEASESEIERYLEAFYNDIDDSLDSNIVIHQADEKEDDEEVDAGKPTV
FT                   VTAPAATVATTQPAPVIQPAIQTTTPMFNPIFTPATTQPAIRPVSPISGATPQSFGVYG
FT                   NEDASPSTSNTLVNTGRDRDVDAGSIGTFAVPRLKTMTSKLSLPKVKGKAITNLNHLAH
FT                   YSPAQVDLSNTRAPQSCFQTWYEGVKRDYDVTDEEMSIILNGLMVWCIENGTSPNINGM
FT                   WVMMDGETQVEYPIKPLLDHAKPTFRQIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNL
FT                   TDYSLARYAFDFYEMTSTTPVRAREAHIQMKAAALRNVQNRLFGLDGNVGTQEEDTERH
FT                   TAGDVNRNMHNLLGVRGV"
FT   mat_peptide     <1. .616
FT                   /product="NIb"
FT   mat_peptide     617. .1606
FT                   /product="coat protein, CP"
XX
SQ   Sequence 1826 BP; 551 A; 384 C; 420 G; 471 T; 0 other;

AJ566346  Length: 1826  August 24, 2004 08:29  Type: N  Check: 8338  ..

       1  ttcgacagtt gttgacaata cactcatggt tattttggca atgacatatt
      51  cactcctgaa gcttggatac catccggata cacacgattg tatttgtcgg
     101  tacttcgtga atggtgatga tcttgtcctt gcagtgcacc cagcatacga
     151  gagcatttat gatgagcttc aagagcactt ttcccaactt ggattgaatt
     201  acacattcgc cacaaagact gaaaacaagg aagagctgtg gtttatgtca
     251  cataaaggtg ttctctacga tggcatgtat attcccaagc tggagcctga
     301  gaggattgta tcaatacttg aatgggacag atcaaatgag ccaatccatc
     351  gattagaggc aatttgtgct tcaatggtgg aagcgtgggg ttataaggag
     401  ctgctgaggg agatccggaa attttacagc tgggttcttg aacaagcacc
     451  atataatgct ctttcaaaag atggaaaagc cccgtacata gcagagacgg
     501  cactcaagaa actctatact gattctgaag cgtctgagtc ggaaattgag
     551  agatatcttg aagcatttta caatgatatt gatgatagcc ttgactccaa
     601  cattgttata caccaggctg atgaaaagga ggacgatgaa gaagtcgatg
     651  caggaaaacc cactgtagta actgcaccgg cagcaactgt ggcaacaact
     701  caaccagctc cagtgataca acctgcaatt caaaccacaa caccaatgtt
     751  caaccccatt ttcactccag caacaactca gcctgcgata agaccagttt
     801  ctccaatttc aggggccaca ccgcagtctt ttggagttta tggaaatgag
     851  gatgcatcac ctagcacctc aaacactttg gtgaacacag gaagagatag
     901  ggacgtcgat gcaggatcaa ttggaacttt cgcagtgcca cgcttaaaaa
     951  caatgacatc gaagttatct ctaccgaagg tgaaaggaaa agcaattacg
    1001  aacttaaatc atttggcaca ttacagtcct gcacaagttg atttatcaaa
    1051  cacacgagct ccacaatcct gtttccagac ttggtatgaa ggagttaagc
    1101  gtgattacga tgtcacagat gaggaaatga gcatcatttt gaatggcctg
    1151  atggtttggt gcatcgaaaa cggaacgtct cctaacatca acggaatgtg
    1201  ggtgatgatg gatggggaga cacaagtgga gtatccaata aagccattgt
    1251  tggatcacgc gaaacccact tttagacaaa ttatggcaca tttcagtaac
    1301  gtggctgaag cgtatattga aaaacggaat tacgagaaag catacatgcc
    1351  aaggtatgga attcagcgca acctgacaga ttacagcctc gccagatacg
    1401  cctttgattt ttacgaaatg acttcaacaa cgcctgtgcg tgcacgtgaa
    1451  gctcatatac agatgaaggc agcagcattg agaaatgttc agaatcgttt
    1501  atttggcttg gatggaaacg tcggaacaca agaagaggac acagagagac
    1551  acaccgctgg tgacgtaaat cgcaacatgc acaacctcct cggtgtgagg
    1601  ggagtgtagt ggtctcggta tctatcataa actctacttg ggtgagagtc
    1651  tagtcaccca attgttttta gattcctgtt agcatccttt tctccgcttt
    1701  aattgcggca cattcagtga ggttgtacct ccacatgtgt tagtctttta
    1751  ttgtcgaaca caggcccttg tatctgatgt agcgagtgtt tcactccatt
    1801  cgggttatag ttcttgtgca agagac