Sequence of DPV Peru tomato mosaic virus

Peru tomato virus proviral partial gene for P1 protein, isolate LS6

ACC No: AJ616020

Dated: 2004-10-10 | Length: 1080 | CRC: 1561654827

                !!NA_SEQUENCE 1.0
ID   AJ616020   standard; genomic RNA; VRL; 1080 BP.
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AC   AJ616020;
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SV   AJ616020.1
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DT   08-OCT-2004 (Rel. 81, Created)
DT   10-OCT-2004 (Rel. 81, Last updated, Version 2)
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DE   Peru tomato virus proviral partial gene for P1 protein, isolate LS6
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KW   P1 protein.
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OS   Peru tomato mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1080
RA   Alminaite A.;
RT   ;
RL   Submitted (02-DEC-2003) to the EMBL/GenBank/DDBJ databases.
RL   Alminaite A., Dept. of Applied Biology, Helsinki University,
RL   Latokartanonkaari 7, PO Box 27, 00014 HKI, FINLAND.
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RN   [2]
RA   Malgarejo T.A., Alminaite A., Fribourg C., Spetz C., Valkonen J.P.T.;
RT   "Strains of Peru tomato virus infecting cocona (Solanum sessiliflorum),
RT   tomato and pepper in Peru with reference to genome evolution in genus
RT   Potyvirus";
RL   Arch. Virol. 149(10):2025-2034(2004).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1080
FT                   /country="Peru"
FT                   /db_xref="taxon:187978"
FT                   /mol_type="genomic RNA"
FT                   /proviral
FT                   /organism="Peru tomato mosaic virus"
FT                   /isolate="LS6"
FT                   /isolation_source="Solanum sessiliflorum"
FT   5'UTR           1. .213
FT   CDS             214. .>1080
FT                   /product="P1 protein"
FT                   /protein_id="CAE82253.1"
FT                   /translation="METAQVNIMFGSFMCNVPHAVQFPTKPVVETSHAELEVAVKDPFA
FT                   DLEVSLQPYFERRMFANVRKKQNGTIVYKRPTANKVSKLKKRALSAKKEHEEFMLAAPS
FT                   IVTTISVAGGPSPSQLQKEVKQVKPLHKTPSMKRRVSYRNPVMTDAQLNWLVKQLKNIM
FT                   AKKEGSVELVGRRTTRVHYRATHLGVRAMCELAHMRGIRKRVDVKIPTEHVPFLKSLAR
FT                   VPTWGRVVHNTDVRRGDSGMILQSKLCRGHFGRSWDDLFIVRGSFEGKILDARSKLTET
FT                   TIFRMIQF"
XX
SQ   Sequence 1080 BP; 351 A; 216 C; 241 G; 271 T; 1 other;

AJ616020  Length: 1080  October 12, 2004 08:59  Type: N  Check: 2817  ..

       1  aaaattaaaa caaaacataa cagaacaaca aaacgcatac aagcaaacaa
      51  atcttccaag caatcttctt gcaatctaca agcagttaaa ttcaagcaat
     101  taaatcttgt ttacttttca tttactaaag ccttgtaatt cacttgcttt
     151  aatagatctc tagtagcgca attgtaattt ttgttaagtt taaaatcaag
     201  aaaaaccaaa aatatggaaa cagcacaagt caacattatg tttggctctt
     251  tcatgtgcaa cgtgccacat gccgtgcaat tccccaccaa acctgtggtg
     301  gaaaccagcc acgctgagct ggaagtagct gtgaaggatc ctttcgcgga
     351  tttggaggtt tctttacagc catacttcga aaggcgcatg ttcgcaaacg
     401  tgcgaaagaa gcagaatggc actattgtat acaagaggcc tacagctaat
     451  aaagttagca aactgaagaa gcgagctctt tctgcaaaga aagagcatga
     501  agaatttatg ctagcagcsc caagcattgt gacaactatc tcagtagctg
     551  gcggcccatc tccttcacaa cttcagaaag aagtgaagca agtgaaaccg
     601  ctgcataaga caccctctat gaagcgtagg gttagctatc gaaacccagt
     651  catgacagat gctcagctta attggctcgt taaacaactg aaaaacatta
     701  tggccaagaa agaagggagt gtggaactcg ttggacgaag aactacacga
     751  gtgcattata gggcaaccca tcttggagtt cgtgctatgt gtgagcttgc
     801  acatatgcga ggcattcgca agagggtgga tgttaagatt cccactgaac
     851  atgtgccgtt tctgaaaagc ttggcacggg ttccgacctg gggtagagtt
     901  gttcacaaca ctgatgttag aaggggtgat agtggcatga tcctgcaaag
     951  caaactatgc cgaggacatt ttgggcgtag ttgggatgat ttattcatag
    1001  tgaggggctc atttgaagga aaaattctgg atgcaaggtc aaaactgact
    1051  gaaacgacaa tcttccggat gattcaattt