Sequence of DPV Soybean mosaic virus

Soybean mosaic virus partial polyprotein gene for NIb and coat proteins, genomic RNA, isolate SH

ACC No: AJ628751

Dated: 2005-04-15 | Length: 1733 | CRC: 1760325028

                !!NA_SEQUENCE 1.0
ID   AJ628751   standard; genomic RNA; VRL; 1733 BP.
XX
AC   AJ628751;
XX
SV   AJ628751.1
XX
DT   22-JAN-2005 (Rel. 82, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Soybean mosaic virus partial polyprotein gene for NIb and coat proteins,
DE   genomic RNA, isolate SH
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Soybean mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1733
RA   Adams M.J.;
RT   ;
RL   Submitted (25-FEB-2004) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Shi Y.H., Hong X.Y., Chen J., Adams M.J., Zheng H.Y., Lin L., Qing B.X.,
RA   Chen J.;
RT   "Further molecular characterisation of potyviruses infecting aroid plants
RT   formedicinal use in China";
RL   Arch. Virol. 150(1):125-135(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1733
FT                   /country="China:Shanghai"
FT                   /db_xref="taxon:12222"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Soybean mosaic virus"
FT                   /isolate="SH"
FT                   /strain="P"
FT                   /specific_host="Pinellia ternata"
FT   CDS             <1. .1482
FT                   /codon_start=1
FT                   /db_xref="GOA:Q5K4D5"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProt/TrEMBL:Q5K4D5"
FT                   /product="polyprotein"
FT                   /protein_id="CAF32241.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVIAMYYSCCKQGWSEKEIQKKLVFFANG
FT                   DDIILAVSDKDVWLYDTLSTSFAELGLNYNFNERTRKREELWFMSHKAVLIDGVYIPKL
FT                   EPERIVSILEWDRSKELMHRTEAICAAMIEAWGYTELLQEIRKFYLWLLSKDEFKELAA
FT                   SGKAPYIAETALRKLYTDVNTQESELQRYLEVLDFSHADNCCESVSLQSGKETGEDLDA
FT                   GKETKKNTTNEKGDKSQNTQNTQSGKGTTSSGAKDKDINVGSKGKVVPRLQKITRKMNL
FT                   PMVGGKIILNLDHLLEYKPNQVDLFNTRATKTQFTAWYNAVKAEYELEGEQMGVVMNGF
FT                   MVWCIDNGTSPDVNGVWVMMDGEEQVEYPLKPIVENAKPTLRQIVHHFSDAAEAYIEMR
FT                   NSEGPYMPRYGLLRNLRDRDLARYAFDFYEVTSKTPNRAREALAQMKAAALTGVNNKLF
FT                   GLDGNISTNAENTERHTARDVNQNMHTLLGMGPPQ"
FT   mat_peptide     <1. .633
FT                   /product="NIb protein"
FT   mat_peptide     634. .1479
FT                   /product="coat protein"
FT   3'UTR           1483. .1733
XX
SQ   Sequence 1733 BP; 551 A; 313 C; 432 G; 437 T; 0 other;

 AJ628751  Length: 1733  April 19, 2005 08:49  Type: N  Check: 3375  ..

       1  gggaacaaca gtgggcaacc atctacagtt gtagacaaca ccttgatggt
      51  ggttattgct atgtattact cgtgctgcaa acaaggatgg tcggaaaaag
     101  aaattcagaa gaagttggtg ttctttgcta atggggatga cataatttta
     151  gcagttagtg ataaggatgt atggctgtat gacactctta gcacctcgtt
     201  tgctgaactt ggcctcaatt acaattttaa tgagcgaacg aggaagagag
     251  aggaactatg gtttatgtca cataaagccg tactaattga tggggtttat
     301  attccaaagc ttgagccaga acgaatagtc tccatcttag aatgggacag
     351  aagcaaggag cttatgcacc ggaccgaagc aatttgtgcc gcaatgattg
     401  aagcatgggg gtacacagaa ctgctgcagg aaattcgcaa gttctacttg
     451  tggctcctca gcaaagatga atttaaggaa ctcgctgcat caggaaaagc
     501  accgtatatt gcggagacag ctttaaggaa actttataca gatgttaata
     551  cacaggaaag cgagttgcaa agatacctcg aagttctaga tttcagccat
     601  gcggataatt gttgcgaatc ggtctccttg caatcaggga aagaaacagg
     651  tgaagatttg gatgcaggta aagaaacaaa gaaaaacacc accaatgaga
     701  aaggagacaa gtcccagaat acacaaaaca ctcaaagtgg aaaaggaaca
     751  acaagctctg gagctaagga caaggatata aatgttggat caaaaggaaa
     801  ggttgttcca cgcctgcaaa agatcacgag gaaaatgaat ctcccgatgg
     851  ttggtgggaa aatcattctt aacttggatc atttgcttga gtacaaacct
     901  aatcaggttg atttattcaa cactcgggca acgaagacac agttcacagc
     951  atggtataat gcagtcaagg ctgagtatga actagagggt gagcagatgg
    1001  gtgtggtcat gaatggcttc atggtttggt gtatagataa tggcacatcc
    1051  ccagatgtca atggggtgtg ggtaatgatg gacggagagg aacaagtcga
    1101  gtatccgctg aagcctattg ttgaaaatgc taaaccaact ttaaggcaaa
    1151  tcgtgcatca cttttcagac gcagcggaag cttatattga aatgagaaac
    1201  tctgaaggtc cgtatatgcc tagatacgga ctattgagga atctgagaga
    1251  cagagatctg gcacgctatg cttttgattt ctatgaagtg acttccaaga
    1301  caccaaatag agcaagggaa gcattagcgc aaatgaaggc tgcagctctc
    1351  acgggagtta acaacaagtt gtttggactt gatggcaata tctcaaccaa
    1401  tgccgaaaat actgagaggc acactgcgag ggacgtaaat caaaacatgc
    1451  acacccttct gggcatgggt ccaccacagt aaaggctagg tgaactggtc
    1501  acagttagca tttcgggtcg ctttatagtt ttctataata ctatgttgca
    1551  cttactttaa gtatagcgtg actgtgtcac ctttgttata ctaatgctta
    1601  gtgtggctta gccaccctag tgtactttgt attatagttt atgaatggca
    1651  aggagaacta ttgcaatgct ggagctattc gcagagtgat tccatcacga
    1701  gagtggccga agtacggcaa tatttgttgt cct