Sequence of DPV Soybean mosaic virus

Soybean mosaic virus partial polyprotein gene for NIb and coat proteins, genomic RNA, isolate YZ

ACC No: AJ628755

Dated: 2005-04-15 | Length: 1733 | CRC: 989334866

                !!NA_SEQUENCE 1.0
ID   AJ628755   standard; genomic RNA; VRL; 1733 BP.
XX
AC   AJ628755;
XX
SV   AJ628755.1
XX
DT   22-JAN-2005 (Rel. 82, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Soybean mosaic virus partial polyprotein gene for NIb and coat proteins,
DE   genomic RNA, isolate YZ
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Soybean mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1733
RA   Adams M.J.;
RT   ;
RL   Submitted (25-FEB-2004) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Shi Y.H., Hong X.Y., Chen J., Adams M.J., Zheng H.Y., Lin L., Qing B.X.,
RA   Chen J.;
RT   "Further molecular characterisation of potyviruses infecting aroid plants
RT   formedicinal use in China";
RL   Arch. Virol. 150(1):125-135(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1733
FT                   /country="China:Henan:Yuzhou"
FT                   /db_xref="taxon:12222"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Soybean mosaic virus"
FT                   /isolate="YZ"
FT                   /strain="P"
FT                   /specific_host="Pinellia ternata"
FT   CDS             <1. .1482
FT                   /codon_start=1
FT                   /db_xref="GOA:Q5K4D1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProt/TrEMBL:Q5K4D1"
FT                   /product="polyprotein"
FT                   /protein_id="CAF32245.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVIAMYYSCRKQGWSEDEIQQRLVFFANG
FT                   DDIILAVDDKDVWLYDTLSTSFAELGLNYNFDERTRKREELWFMSHKAVLIDGVYIPKL
FT                   EPERIVSILEWDRSKELMHRTEAICAAMIEAWGYTELLQEIRKFYLWLLSKDEFKELAA
FT                   SGKAPYIAETALRKLYTDVNTQESELQRYLEVLDFSHADNCCESVSLQSGKETGEDLDA
FT                   GKETKKNTNNEKGDKSQITQSTQSGKGTTSSGTKDKDINVGSKGKVVPRLQKITRKMNL
FT                   PMIGGKIILNLDHLLEYKPNQVDLFNTRATKTQFTAWYNAVKAEYGLEDEQMGVVMNGF
FT                   MVWCIDNGTSPDISGMWVMMDGEEQVEYPLKPIVENAKPTLRQIMHHFSDAAEAYIEMR
FT                   NSEGPYMPRYGLLRNLRDRDLARYAFDFYEVTSKTPNRAREALAQMKAAALTGVNNKLF
FT                   GLDGNISTNAENTERHTARDVNQNMHTLLGMGPPQ"
FT   mat_peptide     <1. .633
FT                   /product="NIb protein"
FT   mat_peptide     634. .1479
FT                   /product="coat protein"
FT   3'UTR           1483. .1733
XX
SQ   Sequence 1733 BP; 540 A; 304 C; 441 G; 448 T; 0 other;

 AJ628755  Length: 1733  April 19, 2005 08:49  Type: N  Check: 3075  ..

       1  ggaaacaata gtgggcagcc atctacagta gtggacaaca ctctcatggt
      51  tgttattgct atgtattatt catgccgtaa acaaggatgg tcagaggatg
     101  agattcagca gaggctggtg ttcttcgcca atggggatga tataattctg
     151  gcagttgatg ataaagatgt atggctatat gacactctta gcacctcgtt
     201  tgctgagctt ggtcttaatt ataattttga tgagcggacg aggaaaagag
     251  aagagttgtg gttcatgtca cacaaagccg tactaattga tggagtttac
     301  attccgaagc ttgagccaga gcggatagtt tctatcctag aatgggatag
     351  aagcaaagag cttatgcacc gaactgaagc aatttgtgct gcaatgattg
     401  aagcatgggg atacacagag ctgctgcagg aaattcgcaa gttctacttg
     451  tggctcctga gcaaagatga attcaaggaa ctcgctgcat ctggaaaagc
     501  accgtatatt gcggagacag ctttgagaaa gctttacacg gatgttaata
     551  cacaggaaag cgagctgcag agataccttg aagttttaga cttcagccat
     601  gcggataatt gttgtgaatc agtctccttg caatcaggga aggagacagg
     651  tgaagattta gatgcaggta aagagacaaa gaaaaacacc aacaatgaaa
     701  aaggagataa gtctcagatc acacaaagca ctcaaagtgg aaaaggaaca
     751  acaagttctg gaaccaagga caaggatata aatgttggat caaaaggcaa
     801  agttgttcca cgtctgcaaa agatcacgag gaaaatgaat ctcccgatga
     851  ttggtgggaa aatcatcctt aacctggatc atttgctcga gtacaaaccc
     901  aatcaggttg atttgttcaa tactcgagca acgaaaacac agttcacagc
     951  atggtataat gcagttaagg ctgagtatgg actagaggat gagcaaatgg
    1001  gtgtggtcat gaatggcttt atggtttggt gcatagataa tggtacatcc
    1051  ccggatatta gtgggatgtg ggtaatgatg gatggagaag aacaagttga
    1101  gtatccgctg aagcctattg ttgaaaatgc aaaaccaact ttaaggcaaa
    1151  tcatgcatca cttctcagat gcagcggaag cttacattga aatgagaaat
    1201  tctgaaggtc cgtatatgcc tagatacgga ctactgagga atttgagaga
    1251  cagagatctg gcgcgttatg cttttgattt ctatgaagtg acttccaaga
    1301  caccaaatag agcaagagag gcattagcgc aaatgaaggc tgcagctctc
    1351  acgggagtta acaacaagtt gtttggactt gatggcaata tctcaaccaa
    1401  tgccgaaaat actgagaggc acactgcgag ggacgtgaat caaaacatgc
    1451  acactctttt ggggatgggt ccaccgcagt aaaggccagg tgaactggcc
    1501  acagttagca tttcgggtcg ctttatagtt ttctataata ttatgttgca
    1551  cttgtgtcaa gtatagtgtg attgtatcac ctttgctgta cttatactta
    1601  gtgtggctta gccaccctgg tgtgctttat attgtagttt atgaatggca
    1651  gggagaacta ttgcaatgct ggagccattc gcagagtgat tccatcacga
    1701  gagtggccga agtacggcaa tatttgttgt cct