Sequence of DPV Soybean mosaic virus

Soybean mosaic virus partial polyprotein gene for P1 protein, genomic RNA, isolate SH

ACC No: AJ628758

Dated: 2005-04-15 | Length: 990 | CRC: -887805029

                !!NA_SEQUENCE 1.0
ID   AJ628758   standard; genomic RNA; VRL; 990 BP.
XX
AC   AJ628758;
XX
SV   AJ628758.1
XX
DT   22-JAN-2005 (Rel. 82, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Soybean mosaic virus partial polyprotein gene for P1 protein, genomic RNA,
DE   isolate SH
XX
KW   P1 protein; polyprotein.
XX
OS   Soybean mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-990
RA   Adams M.J.;
RT   ;
RL   Submitted (25-FEB-2004) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Shi Y.H., Hong X.Y., Chen J., Adams M.J., Zheng H.Y., Lin L., Qing B.X.,
RA   Chen J.;
RT   "Further molecular characterisation of potyviruses infecting aroid plants
RT   formedicinal use in China";
RL   Arch. Virol. 150(1):125-135(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .990
FT                   /country="China:Shanghai"
FT                   /db_xref="taxon:12222"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Soybean mosaic virus"
FT                   /isolate="SH"
FT                   /strain="P"
FT                   /specific_host="Pinellia ternata"
FT   CDS             1. .>990
FT                   /db_xref="GOA:Q5K4C8"
FT                   /db_xref="UniProt/TrEMBL:Q5K4C8"
FT                   /product="polyprotein"
FT                   /protein_id="CAF32248.1"
FT                   /translation="MASIMIGSFACPLMASAKVATGIVREESRASVGIRGATITIASTI
FT                   MAPVIQVMRPSATQVNNYGRRLIKQAENQVELAFGNLFDKPEMKESLFKKSHAKLVRGR
FT                   KQSWRLSTPTFEIAQQRQAEADKLLQEKKDFLAGKYNPEDVVGGYVHVRDQTERGEQIS
FT                   FKGPFWHRTYKTKRVRTHAPNNLLRASASQIERDLLRQLHHSSTKIEYIGKKKQRLHAQ
FT                   YVQAENYGRYAKIRLPHEAKGVRLRQEINSNVWAATIQRLARAVKHSQIIHDNEITYGW
FT                   SGIVMDQRQPLMHKITRNSSFVIRGRLDGRLVDACEILPRNTLHQIVQF"
FT   mat_peptide     1. .990
FT                   /product="P1 protein"
XX
SQ   Sequence 990 BP; 300 A; 206 C; 247 G; 237 T; 0 other;

 AJ628758  Length: 990  April 19, 2005 08:56  Type: N  Check: 3503  ..

       1  atggctagca ttatgattgg gtcgttcgct tgtcccctta tggccagtgc
      51  aaaggttgca actgggattg tacgtgagga gtcacgtgca agtgtgggga
     101  ttcgtggggc aacaatcact atagcctcta ctatcatggc gccagtcatt
     151  caagttatgc gtccaagtgc gactcaggtg aataattatg ggcggcgcct
     201  tataaaacaa gcagaaaacc aagtggaact ggcttttgga aatctcttcg
     251  ataagcctga aatgaaggag tcgcttttta aaaagagcca tgctaaacta
     301  gtgcgtggcc gtaaacaaag ttggcgtttg tccacgccaa cttttgaaat
     351  tgctcagcag cggcaggcag aggctgataa actcctgcag gaaaagaaag
     401  actttcttgc aggaaaatac aatcctgagg atgttgtcgg gggttacgtt
     451  catgtacgag accagacgga aagaggagaa caaatcagtt tcaaaggacc
     501  cttctggcac cgcacataca aaactaaacg tgtgcgcacg cacgctccga
     551  ataacctcct acgcgcgagc gcaagccaaa ttgagcgtga tctgctacgt
     601  cagctccatc acagctcaac gaagattgag tatattggga agaagaaaca
     651  acgcttgcac gcacaatatg tgcaagctga aaattatggg cggtatgcaa
     701  aaattcgcct tccacatgag gctaaaggag tgcgacttag gcaggaaatt
     751  aatagcaatg tatgggctgc aaccatacag cgtttggcca gagcagttaa
     801  gcactctcaa ataattcatg ataatgaaat cacctatggg tggagtggca
     851  tagtcatgga tcaaagacag cctttaatgc acaaaattac tcgtaatagt
     901  agttttgtaa ttagagggcg tcttgatggc agattggtgg atgcttgtga
     951  aatacttcca cggaacacac ttcaccaaat tgttcaattt