Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Uganda variant segment DNA B, complete sequence, isolate EACMV-UG[K90]
ACC No: AJ704962
Dated: 2006-09-14 | Length: 2776 | CRC: 1747331137
ID AJ704962; SV 1; circular; genomic DNA; STD; VRL; 2776 BP.
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AC AJ704962;
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DT 12-MAY-2006 (Rel. 87, Created)
DT 14-SEP-2006 (Rel. 89, Last updated, Version 3)
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DE East African cassava mosaic virus-Uganda variant segment DNA B, complete
DE sequence, isolate EACMV-UG[K90]
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KW BC1; BV1; complete genomic segment; MP gene; NSP gene.
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OS East African cassava mosaic virus-Uganda variant
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2776
RA Bull S.E.;
RT ;
RL Submitted (13-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Bull S.E., Disease & Stress Biology, John Innes Centre, Colney Lane,
RL Norwich, Norfolk, NR4 7UH, UNITED KINGDOM.
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RN [2]
RA Bull S.E.;
RT "Diversity of cassava-infecting geminiviruses in Kenya";
RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK.
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RN [3]
RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G.,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87:3053-3065(2006).
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RN [4]
RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. .,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87(Pt 10):3053-3065(2006).
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FH Key Location/Qualifiers
FH
FT source 1. .2776
FT /organism="East African cassava mosaic virus-Uganda
FT variant"
FT /segment="DNA B"
FT /specific_host="Manihot esculenta"
FT /isolate="EACMV-UG[K90]"
FT /mol_type="genomic DNA"
FT /country="Kenya:Teso, Busia/Bugeni"
FT /clone="K90FB-4[2002]"
FT /virion
FT /db_xref="taxon:374777"
FT CDS 358. .1134
FT /transl_table=1
FT /gene="NSP"
FT /product="BV1"
FT /function="nuclear shuttle protein"
FT /protein_id="CAG29087.1"
FT /translation="MYSGYRRGYKTPYRSPYGARVTPYVYRKTAVKQTSKSRVPRKLAY
FT ESPKCLYTRRSLEDIHNGASLKLPQQGDYTSYVTLPCRGIDGNGGRSVDHIKLLSLRVS
FT GTVNISQCGGDDNMGERTTMRGIFFMACLVDKKPFVPEGVSILPTFNELFGEYESVYGM
FT PRLKENVRHRYRVIGTSKLYITTDEEHIQKPFSLRRRLSGGKYPMWSSFKDVDNSSTGG
FT NYKNINKNAILVSYVWVSLCRSTCDVYSQFVLNYVG"
FT CDS complement(1263. .2369)
FT /transl_table=1
FT /gene="MP"
FT /product="BC1"
FT /function="movement protein"
FT /protein_id="CAG29088.1"
FT /translation="MTSNPLRGQLYIYDPCSALVCYYRYPMHICFHVYKTFYKLALTFI
FT RLFFPFTNPCFFFIHSMDNQFTVTDNNYINSKRTEYALTNDAAPINLQFPSSFEQATMR
FT LKGRCMKIDHIIIEYRNQVPFNAIGSVIVEIRDNRVSLEDAAQAAFTFPIACNVDLHYF
FT SSTYFSISEPSPWRIMYRVEDSNVIEGVKFASIKAKLRLSSAKHSTDIRFKPPTINILS
FT KGYTKDCIDFWSVEKGETRRRLLNPTPHAHSQRPITHRPITILPGETWATKSQIGLPSS
FT SGPARLDHFRSQSMRMDPSTTPTDLDNDSTEYPYQTLHRLHTPELDPGDSVSQTPSDSV
FT SRKDLETLLESTINKCLIKIKSEAPRQL"
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SQ Sequence 2776 BP; 779 A; 445 C; 745 G; 807 T; 0 other;
aj704962 Length: 2776 14-SEP-2006 Type: N Check: 2835 ..
1 accggatggc cgcgcccgaa aaagcagggt gaccccacaa tggcccgcac
51 gcactaagta atgtcagcca atcatgttca agactggaag acgcggtagt
101 tacgtattga tgagtaagtg gtcccgacgc actaatgttg acaggcaatt
151 ggattgctat gtgtgtatca tattcatata ggtgtgttac gggttaatct
201 aaagttaggt gatggggcct atcataaaaa cgcaatacat aggtacgtat
251 gtacatattg attatatttt tgtttgcgga tatatgagtt gccacgtgta
301 taatggataa ggaatgtcct ataaatattt ggcatgtctc tcgtccgtta
351 atgcaagatg tattctggtt acaggcgtgg gtataagact ccgtatagga
401 gtccgtatgg cgctcgtgta acaccatatg tttatcgtaa gactgctgtt
451 aaacaaacgt ctaaatctcg tgtaccgcga aagttggcgt atgaatcgcc
501 aaaatgtcta tatacgcgac gctcattgga ggatatccat aatggggctt
551 ccttaaagtt gcctcaacag ggggattata cgtcctacgt gacactccca
601 tgtcgaggta tcgatggtaa tgggggtagg tctgttgatc atataaaatt
651 attaagtttg agggtgtctg ggaccgtcaa tatcagtcaa tgcggtggtg
701 atgataatat gggagagaga acgaccatga ggggtatttt tttcatggct
751 tgtcttgttg ataagaaacc attcgttcca gagggggtta gtatattgcc
801 gacgtttaat gagttgttcg gggaatatga atccgtgtat ggcatgccta
851 ggttgaagga aaacgttcgt caccgttatc gcgtgattgg gacgtcgaaa
901 ttatatataa cgaccgatga agagcacatc cagaagccat ttagtctacg
951 tcgaagacta agtggaggga aatatcctat gtggtcgtcg ttcaaggatg
1001 tggataatag tagtacaggt gggaactata aaaatataaa taagaacgct
1051 atactagtta gttatgtgtg ggtatcgcta tgtcggtcca cgtgtgatgt
1101 gtattcccag tttgtactta attacgtcgg ttgataataa aacgagataa
1151 gtgtgttgac attaattatg tttgaactaa cgaaatatga gatgaacatc
1201 aatggaaagc acatatagtg ttaatatgta gcgaatcaaa tatcgtacat
1251 atcaagtgtt tattacaatt gcctgggtgc ttcggatttt attttgatga
1301 gacacttgtt tatggtactc tcaagcagtg tctcgaggtc ctttctggat
1351 actgagtcgg atggggtctg tgataccgag tcccctgggt ccaattcggg
1401 tgtgtgtaat ctgtgtagtg tctggtaagg atattctgtg gagtcgttgt
1451 ctaagtccgt tggtgttgtc gatgggtcca ttctcatgga ctgtgaacga
1501 aagtggtcca gccttgctgg gccggatgag ctgggtagcc caatctgaga
1551 cttcgtggcc catgtttctc cagggagaat ggtgatgggc ctgtgggtta
1601 tgggtcgttg actatgagca tgtggagttg gatttagtaa tcgccgtcgt
1651 gtttctcctt tttccacgga ccagaagtct atgcaatcct ttgtgtagcc
1701 cttggataat atgttaattg ttgggggttt gaaacgtatg tccgtggaat
1751 gtttggccga tgataatcgg agcttggcct tgatggatgc gaatttcacg
1801 ccttctatga cgtttgagtc ttcgactctg tacatgattc tccaagggga
1851 gggttcggaa atcgaaaaat atgtagacga gaagtagtgg aggtctacgt
1901 tgcaagctat tgggaaagtg aatgctgctt gagcagcgtc ttcaaggctg
1951 acgcgattgt ctctgatttc tacgataacc gacccaattg cgttaaatgg
2001 gacctggttt cggtattcaa ttataatgtg gtcgattttc atacatcggc
2051 ctttgagtcg catggtcgcc tgctcgaatg agctcggaaa ttggagattg
2101 attggtgcag catcgttggt taatgcgtac tctgtgcgtt tgctgttgat
2151 gtaattattg tctgtgacgg tgaattggtt gtccatacta tgaatgaaaa
2201 aaaaacaagg gttagtaaac ggaaagaaga gacgtataaa agtcagagca
2251 agtttataaa atgtcttgta tacatggaag catatatgca ttgggtatcg
2301 ataataacac actaaagcag aacaaggatc atatatgtat aattggccgc
2351 gcagcggatt ggaagtcata caaatcggcg aacaaataat aaatctaatg
2401 aggttagggg atggaaataa cttacggaag cacctaggaa gcagtcggga
2451 ttgaattctt gttataagtg gagaaaacaa agaaataaaa gttaacgaaa
2501 taaaagtatg acggattggt atagaaagga aagtgagcag atgatatgcg
2551 ccgtgtcgtt aaatgagatg ttattgggtg tttatatagg cgttaataag
2601 cgagacgtgg tagagagaga aagaagagag aggcgagagc aatcggggga
2651 cactcaaagt ctgtagcaat cgggggaaag gggggcaatt tatatgatgc
2701 cccctaaatg gcatttatgt aatatcctca ttgaatgtga aatgcaaacg
2751 tggaaagcgg ccatccgtat aatatt