Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus segment DNA A, complete sequence, isolate EACMV-[K325]
ACC No: AJ717548
Dated: 2006-09-14 | Length: 2801 | CRC: -1052077460
ID AJ717548; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
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AC AJ717548;
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DT 09-MAR-2006 (Rel. 87, Created)
DT 14-SEP-2006 (Rel. 89, Last updated, Version 3)
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DE East African cassava mosaic virus segment DNA A, complete sequence, isolate
DE EACMV-[K325]
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KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein;
KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein.
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OS East African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2801
RA Bull S.E.;
RT ;
RL Submitted (19-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre,
RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM.
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RN [2]
RA Bull S.E.;
RT "Diversity of cassava-infecting geminiviruses in Kenya";
RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK.
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RN [3]
RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G.,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87:3053-3065(2006).
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RN [4]
RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. .,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87(Pt 10):3053-3065(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="East African cassava mosaic virus"
FT /segment="DNA A"
FT /specific_host="Manihot esculenta"
FT /isolate="EACMV-[K325]"
FT /mol_type="genomic DNA"
FT /country="Kenya:Kitui, Township"
FT /clone="K325FA-1[2002]"
FT /virion
FT /db_xref="taxon:62079"
FT CDS 174. .539
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q2A8T8"
FT /protein_id="CAJ78130.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCPEGL"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1 protein"
FT /db_xref="GOA:Q2A8T7"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q2A8T7"
FT /protein_id="CAJ78131.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQSLVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q2A8T6"
FT /protein_id="CAJ78132.1"
FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFAITNHDKRPGNMTHDI
FT ITLQIRFNHNIRTALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT
FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="GOA:Q2A8T5"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q2A8T5"
FT /protein_id="CAJ78133.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQEAREHDPRHHHTPDTVQPQ
FT HSDGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT CDS complement(1565. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /db_xref="GOA:Q2A8T4"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q2A8T4"
FT /protein_id="CAJ78134.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKAFSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYAEALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEEIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFVTLYEPL
FT FSSANQSPTPHSEDQGTQT"
FT CDS complement(2254. .2487)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q2A8T3"
FT /protein_id="CAJ78135.1"
FT /translation="MGCLISMFSSNSKASSNVPTPDSSISFPHPDQHISIRTFRELNPR
FT PMSRLTLKREGNFLTMEFSKSMPEVPGERASI"
XX
SQ Sequence 2801 BP; 733 A; 547 C; 728 G; 793 T; 0 other;
aj717548 Length: 2801 14-SEP-2006 Type: N Check: 1503 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccccaccg gatggccgca
51 ctcgtgaaag aaagtggtcc ccgtgcactt gtttcggtcg gccagtcata
101 ttcacgcgtg aaagtctaga tatttctggt tggacgttat atacttcgtc
151 gcgaagtagt ggagcgcgtc aacatgtggg atccattgtt aaacgatttt
201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa caggaatacg atcgcggtac tgtcggggct gagtatatac
301 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta
501 cagaatgtat cgaagcccag atgtcccgaa gggctgtgaa ggcccatgta
551 aggttcagtc ctatgaacag agggatgatg ttaagcatac gggtatggtc
601 cgatgtgtca gtgatgttac gcgtgggtca ggcattaccc atagagttgg
651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atctggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttctttctc
751 gttcgagata gaaggcctta tggtccgagc cctcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac ggcaactgtg aagaatgatc
851 ttagggaccg gtatcaggtg ttacgtaaat tttatacgac tgttgttggt
901 ggaccctctg ggatgaagga acaatcgctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc
1001 atactgagaa tgcgttgtta ttatatatgg catgtacaca tgcctcaaat
1051 cctgtgtatg ctacgctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagtg
1151 tgtttagtaa tacatcgtac agaacatgat caacagcttg aagtacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct
1251 aaatactttt aagaaaagac cagtcggagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacacttg tgaatcccca atgccgtccg aatgttgtgg
1351 ttgaaccgta tctggagtgt gatgatgtcg tgggtcatgt tccctggcct
1401 cttgtcgtgg ttggtgattg cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attcgttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt
1551 cgaggtctac ccgcctacgt ctgagtgccc tggtcttcgc tgtgcggtgt
1601 tggactttga ttggcacttg agaacaatgg ctcgtagagg gtgacgaagg
1651 tggcattctt taaagcccag gctttaaggg actgattctt ttcctcttct
1701 agaaactctt tatatgagga agttggtcct ggattgcaga ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt
1801 gccagtccct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg
1851 gggtcgacgt catcaatgac gttgtaccag gcgtcgttgg aatatatctt
1901 tggagacaga tccaggtgtc cacataaata attatgtggg cccagtgaac
1951 gagcccacat ggtcttcccg gttcggctat caccttctag aacaatactg
2001 atcggtcgcc atggccgcgc agcgggactg catatatttt cggataccca
2051 tacttcgatt tcctctggga cttgtgtaaa tgaggaggat aagaacggac
2101 taacgtatgt ttggggcgga gcctggaaga ttctatctgc gttagcagat
2151 atgttatgaa actgtaaaaa aaaggacttg ggatcttttt ccttgataat
2201 ttgaagagct tctgatttag aagaagcatt caacgcttct gcatatacct
2251 gagctaaatg ctggccctct cccctggcac ttctggcatc gacttggaaa
2301 attccatcgt caagaaattc ccctcccttt tcaatgtaag ccttgacatc
2351 ggacgaggat ttagctccct gaatgttcgg atggaaatgt gttgatctgg
2401 atggggaaat gagatcgaag aatctggggt tggtacattg gaacttgcct
2451 tcgaattgga tgagaacatg gagatgaggc accccatcct gatgtagttc
2501 tctgcaaacc ctaatgaatt tgatattcgt cgggtaagaa aaggctttta
2551 attgggaaag ggcctcttcc tttgttagtg agcatcgggg ataggtgatg
2601 aaataatttt tggcatttat ttgaaaacga ccggctcttg gcatatttgt
2651 tgtcgttttg gatcggggga cactcaaaac tccaggggaa cggtggaatg
2701 gggggcatta tataggatgt cccccaatgg catatgtgta aataggtaga
2751 tttccattca aaatttgaat tgcgaatatt ggcggccatc cgattaatat
2801 t