Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus segment DNA A, complete sequence, isolate EACMV-[K36]
ACC No: AJ717554
Dated: 2006-09-14 | Length: 2802 | CRC: 570282892
ID AJ717554; SV 1; circular; genomic DNA; STD; VRL; 2802 BP.
XX
AC AJ717554;
XX
DT 09-MAR-2006 (Rel. 87, Created)
DT 14-SEP-2006 (Rel. 89, Last updated, Version 3)
XX
DE East African cassava mosaic virus segment DNA A, complete sequence, isolate
DE EACMV-[K36]
XX
KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein;
KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein.
XX
OS East African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2802
RA Bull S.E.;
RT ;
RL Submitted (19-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre,
RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM.
XX
RN [2]
RA Bull S.E.;
RT "Diversity of cassava-infecting geminiviruses in Kenya";
RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK.
XX
RN [3]
RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G.,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87:3053-3065(2006).
XX
RN [4]
RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. .,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87(Pt 10):3053-3065(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2802
FT /organism="East African cassava mosaic virus"
FT /segment="DNA A"
FT /specific_host="Manihot esculenta"
FT /isolate="EACMV-[K36]"
FT /mol_type="genomic DNA"
FT /country="Kenya:Kwale, Boundary"
FT /clone="K36FA-23[2001]"
FT /virion
FT /db_xref="taxon:62079"
FT CDS 175. .531
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q2A8Q2"
FT /protein_id="CAJ78166.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYPLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCP"
FT CDS 335. .1108
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1 protein"
FT /db_xref="GOA:Q2A8Q1"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q2A8Q1"
FT /protein_id="CAJ78167.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGPGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1105. .1509)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q2A8Q0"
FT /protein_id="CAJ78168.1"
FT /translation="MDSRTGELITAPQAKNGVFTWEIINPLYFAITNHDKRPGNMNHDI
FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT
FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY"
FT CDS complement(1250. .1657)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="GOA:Q2A8P9"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q2A8P9"
FT /protein_id="CAJ78169.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTVQPQ
FT HPEGTGDSQVFSELQGLDDLTASDWSFLKSI"
FT CDS complement(1566. .2645)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /db_xref="GOA:Q2A8P8"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q2A8P8"
FT /protein_id="CAJ78170.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKAFSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPQEIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEERNQSLKDWALKNATFVTLYEPL
FT FSSAHQSPTPHSENQGTQT"
FT CDS complement(2255. .2488)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q2A8P7"
FT /protein_id="CAJ78171.1"
FT /translation="MGCLISMFSSNSKASSNVPTPDSSISFPHPDQHISIRTSRALNHR
FT PMSKLTLKREGNFLTMEFSKSMPEVPGGRANI"
XX
SQ Sequence 2802 BP; 728 A; 551 C; 733 G; 790 T; 0 other;
aj717554 Length: 2802 14-SEP-2006 Type: N Check: 4013 ..
1 accggatggc cgcgcccgaa aaagcatgtg gaccccacgg gattggccgc
51 gcccgtgaaa gaaagtggtc cccgcgcact agttgtggtc ggccagtcat
101 attcacgcgt gaaagtctag atatttgtgg tttgtcttta tagacttcgt
151 cgcgaagtag tggagcgcgt caacatgtgg gatccattgt tgaacgattt
201 tcccgaaacc gttcacggtt tccgttctat gcttgctgtt aaatacccgt
251 tacatcttga acaggaatac gatcgcggta ctgtcggggc tgagtatata
301 cgggatctaa taggggttct acggtgtaag aattatgtcg aagcgaccag
351 gagatataat aatctcaaca cccgtatcca aggtgcggag gaggctgaac
401 ttcgacagcc catacacgaa ccgtgttgtt gcccccactg tccgcgtcac
451 cagaagcaaa atatgggcca acaggcccat gtatcggaag cccaagatgt
501 acagaatgta tcgaagccca gatgtcccta agggctgtga aggcccatgt
551 aaggttcagt cctatgaaca gagggatgat gttaagcaca ctggtatggt
601 tcgatgtgtc agtgatgtta cccgtgggcc aggcattacc catagagtcg
651 ggaagaggtt ttgtgtgaag tccatatata tattgggcaa gatctggatg
701 gatgagaata tcaagaagca aaatcatacg aaccatgtta tgttcttcct
751 ggttcgagat agaaggccgt atgggccgag cccgcaagat tttggacaag
801 tgttcaacat gtttgataat gaacctacta ctgcaactgt gaagaatgat
851 cttagggacc ggtatcaggt gttacgtaaa ttctatgcga ccgttgttgg
901 tggaccctct gggatgaagg aacaagctct ggttaagagg ttttttagga
951 tcaataatca tgtagtgtat aatcatcagg aacaggccaa gtatgagaat
1001 catactgaga atgcgttgtt attgtatatg gcatgtacac atgcctcaaa
1051 tcctgtgtat gctacgctga aaatacgtat ctatttctat gatgcagtga
1101 caaattaata aaggttgaat tttattgcat gttgctccgt aacttggagt
1151 gtgttgagta atacatcgta cagaacatga tcaacagctt gaagtacagt
1201 gttaatggaa ataacgccta tcatatctaa atacttgagc acttgatatc
1251 taaatacttt taagaaaaga ccagtcggag gccgtaaggt cgtccagacc
1301 ttgaagttca gaaaacactt gtgaatcccc agtgccttcc ggatgttgtg
1351 gttgaaccgt atctggagtg tgatgatgtc gtggttcatg ttccctggcc
1401 tcttgtcgtg gttggtgatt gcgaaataga ggggatttat tatttcccag
1451 gtaaaaacgc cattctttgc ttgaggcgca gtgatgagtt cccctgtgcg
1501 agaatccatg gttgatgcag tcgatatgga gatagaacga gcagccgcat
1551 tcgaggtcta cccgcctacg tctgagtgcc ctggttttcg ctgtgcggtg
1601 ttggactttg atgggcactt gagaacaatg gctcgtagag ggtgacgaag
1651 gtggcattct ttaaagccca gtctttaagg gactgattcc tttcctcttc
1701 cagaaactct ttatatgatg atgttggtcc tggattgcag aggaagatag
1751 tgggaatgcc gcctttaatt tgaattggct tcccgtactt tgtattgctt
1801 tgccagtccc tttgggcccc catgaattct ttgaagtgtt tgaggtagtg
1851 ggggtcgacg tcatcaatga cgttgtacca ggcgtcgttg gaatatatct
1901 ttggagacag atccaggtgt ccacacaaat aattatgtgg gcccagggaa
1951 cgagcccaca tggtcttccc ggttcggcta tcaccttcta gaacaatact
2001 gatcggtctc catggccgcg cagcgggact gcatatattt tcggataccc
2051 atacttctat ttcctgtggg acttgtgtaa aggaggatga taagaacgga
2101 ctaacgtaag tttggggcgg agcctggaag attcgatctg cgttagcaga
2151 tatgttatgg aactgtaaaa aaaaggactt tggatctttt tctttgataa
2201 tttgaagagc ttctgattta gaagaagcat tcaacgcgtc tgcatatacc
2251 tgagctaaat gttggccctc ccccctggca cttcgggcat cgacttggaa
2301 aattccatcg tcaagaaatt cccctccctt ttcaatgtaa gctttgacat
2351 cggacgatga tttagcgccc tggatgttcg gatggaaatg tgttgatcgg
2401 gatggggaaa tgagatcgaa gaatctgggg ttggtacatt ggaacttgcc
2451 ttcgaattgg atgagaacat ggagatgagg caccccatcc tgatgtagtt
2501 ctctgcaaac cctaatgaat ttgatatttg tcgggtaaga aaaggctttt
2551 aattgggaaa gggcctcttc ctttgttaat gagcatcggg gataggtgat
2601 gaaataattt ttggcattga tttgaaaacg accggctctt ggcatatttg
2651 ctgtcgtttt ggatcggggg acactcaaaa ctccagggga acggtggaat
2701 ggggggcatt atataggatg tcccccaatg gcatatgtgt aaataggtag
2751 agttccattc aaaatttgaa ttgcgaatat ttgcggccat ccgattaata
2801 tt