Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus partial mRNA for polyprotein (NIb-CP gene), isolate Tor2
ACC No: AJ717733
Dated: 2005-03-29 | Length: 1811 | CRC: 225607512
!!NA_SEQUENCE 1.0
ID AJ717733 standard; genomic RNA; VRL; 1811 BP.
XX
AC AJ717733;
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SV AJ717733.1
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DT 01-JUN-2004 (Rel. 80, Created)
DT 29-MAR-2005 (Rel. 83, Last updated, Version 2)
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DE Sweet potato mild mottle virus partial mRNA for polyprotein (NIb-CP gene),
DE isolate Tor2
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KW coat protein; NIb-CP gene; polymerase; polyprotein.
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OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-1811
RA Mukasa S.B.B.;
RT ;
RL Submitted (31-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Mukasa S.B.B., Dept. of Plant Biology & Forest Genetics, Uppsala Genetics
RL Center, SLU, Box 7080,, SE 750 07 Uppsala, SWEDEN, SWEDEN.
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RN [2]
RA Tairo F., Mukasa S.B., Jones R.A.C., Kullaya A., Rubaihayo P.R.,
RA Valkonen J.P.T.;
RT "Unravelling the genetic diversity of the three main viruses involved
RT inSweet Potato Virus Disease (SPVD), and its practical implications.";
RL Mol. Plant Pathol. 6(2):199-211(2005).
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FH Key Location/Qualifiers
FH
FT source 1. .1811
FT /country="Uganda:Tororo District"
FT /db_xref="taxon:41459"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Sweet potato mild mottle virus"
FT /isolate="Tor2"
FT /specific_host="Ipomoea batatas"
FT CDS <1. .1506
FT /codon_start=1
FT /db_xref="GOA:Q6KB69"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProt/TrEMBL:Q6KB69"
FT /note="polyprotein for polymerase and coat protein"
FT /gene="NIb-CP"
FT /product="polyprotein"
FT /protein_id="CAG30741.1"
FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL
FT INCPRGVASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYIPKLD
FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMAEIEKFAHFWAKKHGLNDVLME
FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKAIEELQKEMEDLDADTTI
FT TVVQRETQKARIREQIETLRAQQIVRPSEAQLQPDVNPTQIVTFEPPRVTGFGALWIPR
FT QQRNYMTPAYIEKIKAYVPHSNLIESGLASEAQLTSWFENTSRDYQVSMDVFMGTILPA
FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ
FT AVAQYMNSLQVGKPLTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN
FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT 3'UTR 1507. .>1811
FT /gene="NIb-CP"
XX
SQ Sequence 1811 BP; 522 A; 338 C; 460 G; 491 T; 0 other;
AJ717733 Length: 1811 April 12, 2005 08:38 Type: N Check: 1334 ..
1 gggaataata gtgggcagcc ttcaacagtt gttgataaca cgttaattct
51 gatgattgct atggaatacg cgatagctaa ggtttttgtc acacgtcctg
101 acattaagta cgtctgcaat ggggacgacc ttctaattaa ttgtccaagg
151 ggcgttgcaa gcgccattag tgagcacttc aaagacgcat tcgcagactt
201 aagcttgaac tacgattttg atcatgtttg tgataaaatc acagacgttg
251 attttatgag tcatagtttc atgtggctgg atgctgagca gatgtacata
301 ccaaagctgg ataaggagcg aattgtggca attttggagt gggaaaggag
351 tgatgagcaa ttcagaacga ggagcgccct gaacgctgct tatattgaga
401 gttttggcta tgaagactta atggctgaga ttgagaaatt cgcacacttt
451 tgggctaaaa aacatggtct taatgacgtc ttgatggagc gagagaaggt
501 tagagacttg tacgttaatg aagatttcga cgcatcagct tttgaaaagt
551 tctatccgga aacattttcg ccatttgacg tttatgttga accgcatgct
601 tcgacatcca aggcaatcga ggagctacag aaggagatgg aggatttgga
651 tgcagacaca acaattactg tggttcagag ggagacacag aaggcgagaa
701 taagagaaca aatcgagaca cttagggcac aacaaattgt gagaccttct
751 gaggcacagc tacagcctga cgtaaatccc acgcaaatcg tcacgtttga
801 accaccaaga gtcactggat ttggcgcttt atggattccg cgccaacaaa
851 ggaactacat gacgccagct tacatcgaga agataaaggc ttatgttcca
901 cattcaaact tgattgaatc tggactagct agtgaagctc aattgaccag
951 ttggttcgag aacacgagca gggattacca agttagtatg gatgttttca
1001 tgggtacaat tttgccagca tggattgtta attgcataat taatgggaca
1051 tctcaggagc gcactaatga gcacacatgg agagctgtga ttatggcgaa
1101 tatggaggat caagaagtgc tttattaccc catcaagccc ataataatca
1151 atgctcaacc aactttgagg caggtgatgc gccatttcgg agaacaagct
1201 gttgctcaat acatgaatag ccttcaagtt gggaaacctc ttacagtgaa
1251 gggcgccgta actgctggct acgctaatgt tcaagatgct tggttaggta
1301 ttgactttct acgggacaca atgcagttga caacaaaaca aatggaagtt
1351 aagcatcaaa ttatcgctgc gaacgtcaca aggcggaaga tccgtgtttt
1401 tgctcttgca gcaccgggag atggcgatga actagacaca gaaaggcatg
1451 tcgtcgacga tgtggctagg ggtcgtcaca gtctgagagg agctcaactc
1501 gactaaatga gcgcgttatc tttaatttca actgcgtgtt tttattttaa
1551 ttacgtttta tgttttgtgt ttgtttgttg tggcacttga accaggtaca
1601 gctggcaggt gtttcggcat ggtgtggtta gacaattggt tcgcaccggt
1651 agtctaagaa gcgctatgta tcacgtggtt ggttaattca tttgtatgga
1701 ttaatcaaga agcgtctatc gcccaaaagg gcaccagaaa atggttgcgt
1751 cattcgtggc gtaatcagtt tttggagttt ggctaggtaa cttgtcgcct
1801 atccaaaagc c