Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus partial mRNA for polyprotein (NIb-CP gene), isolate Kum2
ACC No: AJ717734
Dated: 2005-03-29 | Length: 1814 | CRC: 636444371
!!NA_SEQUENCE 1.0
ID AJ717734 standard; genomic RNA; VRL; 1814 BP.
XX
AC AJ717734;
XX
SV AJ717734.1
XX
DT 01-JUN-2004 (Rel. 80, Created)
DT 29-MAR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Sweet potato mild mottle virus partial mRNA for polyprotein (NIb-CP gene),
DE isolate Kum2
XX
KW coat protein; NIb-CP gene; polymerase; polyprotein.
XX
OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
XX
RN [1]
RP 1-1814
RA Mukasa S.B.B.;
RT ;
RL Submitted (31-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Mukasa S.B.B., Dept. of Plant Biology & Forest Genetics, Uppsala Genetics
RL Center, SLU, Box 7080,, SE 750 07 Uppsala, SWEDEN, SWEDEN.
XX
RN [2]
RA Tairo F., Mukasa S.B., Jones R.A.C., Kullaya A., Rubaihayo P.R.,
RA Valkonen J.P.T.;
RT "Unravelling the genetic diversity of the three main viruses involved
RT inSweet Potato Virus Disease (SPVD), and its practical implications.";
RL Mol. Plant Pathol. 6(2):199-211(2005).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1814
FT /country="Uganda:Kumi District"
FT /db_xref="taxon:41459"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Sweet potato mild mottle virus"
FT /isolate="Kum2"
FT /specific_host="Ipomoea batatas"
FT CDS <1. .1506
FT /codon_start=1
FT /db_xref="GOA:Q6KB68"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProt/TrEMBL:Q6KB68"
FT /note="polyprotein for polymerase and coat protein"
FT /gene="NIb-CP"
FT /product="polyprotein"
FT /protein_id="CAG30742.1"
FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL
FT INCPRGTASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDDEQMYVPKLD
FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMAEIEKFAHFWAEKHGLNDVLME
FT REKVKDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQELEDLDADTTT
FT TVVQRETQKARIRDQIETLRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVSGFGALWIPR
FT QQRNYMTTAYIEKIKAYAPHSNLIESGLASEAQLTSWFENTCRDYQVSMDVFMSAILPA
FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ
FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMKLTTKQMEVKHQIIAAN
FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT 3'UTR 1507. .>1814
FT /gene="NIb-CP"
XX
SQ Sequence 1814 BP; 538 A; 347 C; 448 G; 481 T; 0 other;
AJ717734 Length: 1814 April 12, 2005 08:38 Type: N Check: 5263 ..
1 gggaacaaca gtgggcagcc ctcaacagtt gtcgacaaca cgttgatctt
51 gatgattgct atggaatacg cgatagctaa ggtttttgtc acacgccctg
101 acatcaagta tgtatgtaat ggggacgacc tcttaattaa ttgcccaagg
151 ggtactgcaa gcgccattag tgagcacttc aaggatgcat tcgcagactt
201 aagcttgaac tatgatttcg atcacgtttg tgataagatt acagatgttg
251 atttcatgag tcatagcttc atgtggctag atgatgagca aatgtatgta
301 ccaaagctgg acaaggagcg aattgtagca attttggagt gggaaaggag
351 tgatgagcaa ttcagaacaa ggagcgcctt gaacgctgct tacattgaaa
401 gttttggata tgaagattta atggctgaga ttgagaaatt tgctcacttt
451 tgggctgaaa agcacggact caatgacgtc ttgatggagc gggaaaaggt
501 taaagatttg tacgttaatg aagattttga tgcgtcagcc tttgagaagt
551 tctatccgga aacattttcg ccatttgatg tttatgttga accacatgca
601 tcgacatcca agacaatcga agaactgcag caagaattgg aagatttgga
651 tgcagacaca acaaccactg tggtccaaag ggaaacacag aaggcgagaa
701 taagagatca aattgagaca cttagggcac aacagattgt gagaccttcg
751 gaggcacaac tacagcctga cgtaactccc acgcaaattg tcacgtttga
801 accaccaaga gtctccggat ttggtgcttt atggattccg cgccaacaaa
851 ggaactacat gacgacagct tacatcgaga agattaaggc ttatgctcca
901 cattcaaact tgattgaatc tggactagct agtgaagctc aattaactag
951 ttggttcgag aacacatgta gggactacca agttagtatg gacgtcttca
1001 tgagtgcaat actgccagca tggattgtca actgcataat caatggaaca
1051 tctcaggagc gaactaatga gcatacatgg agagctgtga ttatggcaaa
1101 catggaagac caggaagtgc tttattaccc cataaagccc ataattatca
1151 acgctcaacc aactttaagg caagtgatgc gtcattttgg cgaacaagcc
1201 gtcgctcaat atatgaatag ccttcaagtt ggaaaacctt tcacagtgaa
1251 aggtgctgta actgctggct acgctaatgt tcaagatgct tggctaggta
1301 ttgactttct tcgggacaca atgaagttga caacaaaaca gatggaagtc
1351 aagcatcaaa tcattgcagc gaatgtaaca aggcggaaaa tccgtgtttt
1401 tgctcttgcg gcgccgggag atggcgatga actggacaca gaaaggcatg
1451 ttgttgacga tgttgctaga ggtcgtcata gtctgagagg agctcaactc
1501 gactaaatga gcatgttatc tttaatttca actgcgtgtt tttatttcaa
1551 ttacgttcca tgctttatgt ttgtgtgttg tggcacttga accaggtaca
1601 gctggcaggt gtttcggcat ggtgtggtta gacaattggc acgcgccggt
1651 cgtctaagaa gcgctatgta tcacgtggtt ggttaattca tagctcatat
1701 gggttaatca agaagcgttt atcgcccaaa agggcaccag aaaatggttg
1751 cgtcattcgt ggcgtaatca gtttttggag cttggctagg taacttgtcg
1801 cctatccaaa agcc