Sequence of DPV Lettuce necrotic yellows virus

Lettuce necrotic yellows virus N gene for nucleocapsid protein, genomic RNA, isolate 9

ACC No: AJ746198

Dated: 2005-07-26 | Length: 1539 | CRC: -668160890

                !!NA_SEQUENCE 1.0
ID   AJ746198   standard; genomic RNA; VRL; 1539 BP.
XX
AC   AJ746198;
XX
SV   AJ746198.1
XX
DT   09-JUN-2005 (Rel. 84, Created)
DT   26-JUL-2005 (Rel. 84, Last updated, Version 2)
XX
DE   Lettuce necrotic yellows virus N gene for nucleocapsid protein, genomic
DE   RNA, isolate 9
XX
KW   N gene; nucleocapsid protein.
XX
OS   Lettuce necrotic yellows virus
OC   Viruses; ssRNA negative-strand viruses; Mononegavirales; Rhabdoviridae;
OC   Cytorhabdovirus.
XX
RN   [1]
RP   1-1539
RA   Dietzgen R.G.;
RT   ;
RL   Submitted (08-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   Dietzgen R.G., QABC, Qld Bioscience Precinct, Dept of Primary Industries
RL   and Fisheries, The University of Queensland, 306 Carmody Rd, St Lucia Qld
RL   4072, AUSTRALIA.
XX
RN   [2]
RA   Callaghan B.P., Dietzgen R.G.;
RT   "Nucleocapsid gene variability reveals two subgroups of Lettuce
RT   necroticyellows virus";
RL   Arch. Virol. 150(8):1661-1667(2005).
XX
RN   [3]
RA   Callaghan B.P.;
RT   "Molecular characterisation of lettuce necrotic yellows virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1539
FT                   /country="Australia:South Australia"
FT                   /db_xref="taxon:32612"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Lettuce necrotic yellows virus"
FT                   /isolate="9"
FT                   /isolation_source="field sample"
FT                   /specific_host="Sonchus oleraceus"
FT                   /tissue_type="leaf"
FT   CDS             79. .1458
FT                   /db_xref="UniProt/TrEMBL:Q4W383"
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="CAG34090.1"
FT                   /translation="MTTSAEKLAKLEQLRKERSAVIQKPTVQASSEQVATEKPRVRNTA
FT                   YDSLAGVTIGKRASRKWSDADIKSIPIYDVHQVPAAQVIALGKDLLTQIQNNSVNTVTV
FT                   DYCLVLAVSIPKPAMTSFEHLLTPPSSDQGTRLDFTQPQAGVSNRSGLTAIEKRTLDAT
FT                   RKNLLAETDEEKRARYEAIIKKMEDQEAGLGTSRTTVVTSETEAAAYGFLAATLLKLYA
FT                   KSTESYIAGLAQIRNRFAAWYDCPKAVLDAFQPTEAALVSLRAAFARRPEVLSTWTLWV
FT                   AVNENRTPGLLVTQQGLLNYLACQQFAYPGMHAYTLLMEIHEHTGMKFSDLLVEMDCPA
FT                   TRAGVREALELIRDYEITKDHPKRTTYFRYARNWDPKYFGALQSTECKTLVYVAASVSK
FT                   KVSAQGANGDPMEIFAIKNLDATIKARLDPVAENMAGKILDQMLMDEMSGASWATKAAA
FT                   Q"
XX
SQ   Sequence 1539 BP; 468 A; 317 C; 385 G; 369 T; 0 other;

 AJ746198  Length: 1539  August 2, 2005 08:51  Type: N  Check: 5851  ..

       1  gaaaccacat taagtcatat ccttctaact ctataccctg tgttatttca
      51  gtcaaagtct tttgatcctt atccaaatat gactacgtcc gctgagaagt
     101  tagcaaagtt ggagcagtta aggaaagaaa ggtccgctgt cattcaaaaa
     151  ccgacagttc aggcgagctc ggagcaagtt gcgacagaga agcctagggt
     201  caggaacaca gcgtatgata gtctagcagg agtgacgata ggaaagagag
     251  catcaaggaa atggtccgat gcagatatca aaagtattcc tatatatgat
     301  gtccatcagg tcccggctgc tcaagtcatt gctttaggga aagatctgct
     351  gacacagatt cagaacaact ctgtcaacac tgtcacagta gactactgtt
     401  tagtgttggc agtatctata cctaagccag caatgacatc ttttgaacac
     451  ctcctaacac ctccttcttc agatcaaggt actaggctcg acttcacaca
     501  accgcaggcg ggagtatcta acagatcagg gttgacggct atagaaaaga
     551  ggactctgga cgcaacccgg aagaatttgt tggctgagac tgatgaggaa
     601  aagagggcta ggtacgaagc aataattaaa aagatggaag accaagaggc
     651  tggattgggc acatcaagaa ctactgtagt aacctcggaa accgaggcag
     701  cggcatacgg gtttttggcg gcaacattgc taaaactata cgcgaaatca
     751  actgagtctt atatagccgg acttgcccag ataaggaaca gattcgcggc
     801  atggtatgat tgcccaaaag cagtgttgga tgctttccag ccgacagagg
     851  cagctttggt gtcactgaga gcagcgtttg cccgcagacc cgaagtgtta
     901  tcgacatgga cactgtgggt tgctgtgaac gagaatagga cccctggact
     951  attggtcact caacaagggt tgttgaatta cctggcttgc caacaattcg
    1001  cttatcctgg tatgcatgca tacactctgt tgatggaaat acatgagcat
    1051  acaggaatga agttcagcga tttgttagtg gagatggatt gtccggccac
    1101  tcgcgcaggt gtgagggaag ctttggagtt gattagggat tatgagataa
    1151  ccaaggatca cccgaaacga acaacctatt ttcgatatgc caggaattgg
    1201  gatcctaagt acttcggggc actacaatcg acagaatgca agaccctagt
    1251  gtatgttgcc gcctccgtta gtaagaaggt ctctgcccaa ggtgcaaatg
    1301  gggatccaat ggagatattt gcgattaaaa acctggatgc aacgataaag
    1351  gccaggttgg atcctgttgc agagaatatg gcagggaaaa tactggatca
    1401  gatgctcatg gatgagatgt ctggggcatc ttgggcgaca aaagcagcag
    1451  ctcaataaac agttatcatc tatctataaa gctacagata cgcgcttata
    1501  tataccctca actctatata tatagttgat ttaagaaaa