Sequence of DPV Faba bean necrotic stunt virus

Faba bean necrotic stunt virus segment DNA-R, complete sequence

ACC No: AJ749894

Dated: 2010-09-07 | Length: 1003 | CRC: 1014049949

                
ID   AJ749894; SV 2; circular; genomic DNA; STD; VRL; 1003 BP.
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AC   AJ749894;
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DT   07-JAN-2010 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE   Faba bean necrotic stunt virus segment DNA-R, complete sequence
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KW   master-replication initiator protein; rep gene.
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OS   Faba bean necrotic stunt virus
OC   Viruses; ssDNA viruses; Nanoviridae; Nanovirus.
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RN   [1]
RC   revised by author [04-JAN-2010]
RP   1-1003
RA   Katul L.;
RT   ;
RL   Submitted (24-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   Katul L., Inst. Plant Virol.,Microbiol.& Biosafety, Fed. Biol. Res. Ctr. f.
RL   Agr. & Forestry, Messeweg 11-12, Braunschweig 38104, GERMANY.
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RN   [2]
RX   DOI; 10.1128/JVI.00607-10.
RX   PUBMED; 20592071.
RA   Grigoras I., Timchenko T., Grande-Perez A., Katul L., Vetten H.J.,
RA   Gronenborn B.;
RT   "High variability and rapid evolution of a nanovirus";
RL   J. Virol. 84(18):9105-9117(2010).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1003
FT                   /organism="Faba bean necrotic stunt virus"
FT                   /segment="DNA-R"
FT                   /host="Vicia faba"
FT                   /isolate="JKI-1998/99"
FT                   /mol_type="genomic DNA"
FT                   /country="Ethiopia:Holetta"
FT                   /db_xref="taxon:283824"
FT   TATA_signal     55. .61
FT                   /gene="rep"
FT   polyA_signal    93. .99
FT                   /gene="rep"
FT   CDS             101. .961
FT                   /gene="rep"
FT                   /product="master-replication initiator protein"
FT                   /db_xref="GOA:C7DLN2"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:C7DLN2"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="CAG77479.1"
FT                   /translation="MARQVICWCFTLNNPLSPIFLHESMKYLVYQTEQGESGNIHFQGY
FT                   IEMKKRTSLAGMKRLIPGAHFEKRRGTQGEARAYAMKEESRIEGPWEFGEFIASVEDKL
FT                   REVMNDMKNTGKRPIEYIEECCNTYDKSASTLREFRGELKKKKAIATWELQRKPWMDEV
FT                   DALLQERDGRRIIWVYGPQGGEGKTSYAKHLVKTRDAFYSTGGKTADIAFAWDHQELVL
FT                   FDFPRSFEEYVNYGVIEQLKNGIIQSGKYQSVIKYSDYVEVIVFANFTPRSGMFSDDRI
FT                   VFVYA"
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SQ   Sequence 1003 BP; 312 A; 162 C; 252 G; 277 T; 0 other;

aj749894 Length: 1003  07-SEP-2010  Type: N  Check: 5325  ..

       1  acccccgccc caggttcagc ggagtcatca cgtgagacgc acatgacttt
      51  catttataaa tagctcaagt tgtaatattt tattgtatct tgaataaaat
     101  atggctcggc aagttatatg ctggtgcttt acattaaata atcctctctc
     151  tcctatattt cttcatgagt ccatgaagta ccttgtttat caaactgaac
     201  aaggtgagtc tggaaatatt catttccagg gatacatcga aatgaagaaa
     251  agaacctccc tagctgggat gaagagatta atcccaggtg cacactttga
     301  gaagagaaga ggaacacagg gagaagccag agcttatgct atgaaggaag
     351  aatcaaggat tgaaggtcca tgggagtttg gtgagttcat tgcttcagtt
     401  gaagataagc tcagagaagt catgaatgat atgaagaaca ccggtaagag
     451  accaattgaa tatattgaag agtgttgtaa cacttatgat aagtctgcaa
     501  gtacgcttag agaattcaga ggagaactga agaagaagaa agctattgct
     551  acttgggagt tacagaggaa gccatggatg gacgaggttg atgctttgct
     601  tcaggagaga gatggaagaa gaatcatttg ggtgtatggc ccacaaggtg
     651  gagaagggaa aacctcttac gctaagcatc ttgtaaagac gcgtgatgct
     701  ttttattcga caggtggaaa gacagccgac attgcttttg catgggacca
     751  ccaagagtta gtgctattcg actttccacg aagcttcgag gagtatgtaa
     801  actacggcgt aattgagcaa ttaaagaatg gtattataca gtcagggaaa
     851  taccaaagtg ttattaagta tagtgattac gtagaagtta ttgtatttgc
     901  taattttact ccgcgtagcg gcatgtttag tgatgatagg attgtatttg
     951  tatacgcatg acgtcatttg atcccgtgct gagctggggc ggggcttagt
    1001  att