Sequence of DPV Faba bean necrotic stunt virus

Faba bean necrotic stunt virus segment DNA-U1, complete sequence

ACC No: AJ749895

Dated: 2010-09-07 | Length: 985 | CRC: -214571039

                
ID   AJ749895; SV 2; circular; genomic DNA; STD; VRL; 985 BP.
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AC   AJ749895;
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DT   07-JAN-2010 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE   Faba bean necrotic stunt virus segment DNA-U1, complete sequence
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KW   hypothetical protein; U1 gene.
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OS   Faba bean necrotic stunt virus
OC   Viruses; ssDNA viruses; Nanoviridae; Nanovirus.
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RN   [1]
RC   revised by author [04-JAN-2010]
RP   1-985
RA   Katul L.;
RT   ;
RL   Submitted (24-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   Katul L., Inst. Plt Virol., Microbiol. & Biosafety, Fed. Biol. Res. Ctr. f.
RL   Agr. & Forestry, Messeweg 11-12, Braunschweig 38104, GERMANY.
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RN   [2]
RX   DOI; 10.1128/JVI.00607-10.
RX   PUBMED; 20592071.
RA   Grigoras I., Timchenko T., Grande-Perez A., Katul L., Vetten H.J.,
RA   Gronenborn B.;
RT   "High variability and rapid evolution of a nanovirus";
RL   J. Virol. 84(18):9105-9117(2010).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .985
FT                   /organism="Faba bean necrotic stunt virus"
FT                   /segment="DNA-U1"
FT                   /host="Vicia faba"
FT                   /isolate="JKI-1998/99"
FT                   /mol_type="genomic DNA"
FT                   /country="Ethiopia:Holetta"
FT                   /db_xref="taxon:283824"
FT   stem_loop       join(968. .985,1. .11)
FT                   /gene="U1"
FT                   /note="part of replication origin"
FT   misc_feature    join(979. .985,1. .2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   TATA_signal     256. .262
FT                   /gene="U1"
FT   CDS             352. .825
FT                   /gene="U1"
FT                   /product="hypothetical protein"
FT                   /db_xref="UniProtKB/TrEMBL:D2N0Z9"
FT                   /protein_id="CAG77480.1"
FT                   /translation="MPLVDYLLVDEATEELITSERKRRSVVCSDDDSQVINVKVEDIAI
FT                   DLEDRVVVKLKFRLCYKYRRLLDLTLLGCRMKVHTVLKTTSAPSLKSVLQKRLNMICDG
FT                   NHLISIRLFFININQLINNCKWISSVEDVYPICTLYHIQDSNVINANEIFNNT"
FT   polyA_signal    814. .819
FT                   /gene="U1"
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SQ   Sequence 985 BP; 282 A; 158 C; 198 G; 347 T; 0 other;

aj749895 Length: 985  07-SEP-2010  Type: N  Check: 9963  ..

       1  acccccgtcc cgggttcaga gtcacgtacg gagtgactaa tagccgttgg
      51  attatcttac acgtggacga tcaggatctg tgattcgtga agcgaatctg
     101  acggaagatc gttcacactc acgtggtagg tcccgacaat tgcttttgct
     151  ttactttatc taaagtaaag caagtgggtc tactttaatt attctttttt
     201  ggtggagtac agctgtcttt gcttcttcac gaagcaaagg actttctctc
     251  tcttctataa aaaagctgta tgtgcagaag atgaattcgt tcattcatct
     301  tcttctacat caaatcatct tctctcatca acattaagct tatatagctc
     351  tatgcctttg gtcgattatt tgttggttga tgaggctact gaagagttaa
     401  taacgtcaga gaggaaacgt agatcagtcg tatgttctga tgatgattct
     451  caggtaatca atgtcaaagt tgaagatata gctattgatt tggaagacag
     501  agttgtcgtt aagttgaagt tcagattatg ttataaatac aggaggttgc
     551  ttgatttaac gcttcttggc tgtcgtatga aagttcatac tgtattgaag
     601  accacctctg ctccatcgtt gaagagtgtt ttgcagaaga gacttaatat
     651  gatttgtgat ggtaatcatt taatatcaat tagattgttt ttcattaata
     701  ttaatcagtt gattaataat tgtaaatgga tatcatctgt agaagatgta
     751  tatccaatat gtactttgta tcatattcaa gattcaaatg taattaatgc
     801  taatgagata tttaataata cttaatatgt atttgtttat attgatattg
     851  tttttaatta ctctgcgaag ctatatgtct cggcccaata ggcccaatag
     901  tcttaaggcc caataaattt tacattaaat tggatcagct gacgtcagct
     951  gatcccgtga tgacgtaggg acggggctta gtatt