Sequence of DPV Faba bean necrotic stunt virus
Faba bean necrotic stunt virus segment DNA-S, complete sequence
ACC No: AJ749897
Dated: 2010-09-07 | Length: 992 | CRC: -2041947449
ID AJ749897; SV 2; circular; genomic DNA; STD; VRL; 992 BP.
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AC AJ749897;
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DT 07-JAN-2010 (Rel. 103, Created)
DT 07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE Faba bean necrotic stunt virus segment DNA-S, complete sequence
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KW capsid protein; cp gene.
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OS Faba bean necrotic stunt virus
OC Viruses; ssDNA viruses; Nanoviridae; Nanovirus.
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RN [1]
RC revised by author [04-JAN-2010]
RP 1-992
RA Katul L.;
RT ;
RL Submitted (24-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL Katul L., Inst. Plt Virol., Microbiol. & Biosafety, Fed. Biol. Res. Ctr. f.
RL Agr. & Forestry, Messeweg 11-12, Braunschweig 38104, GERMANY.
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RN [2]
RX DOI; 10.1128/JVI.00607-10.
RX PUBMED; 20592071.
RA Grigoras I., Timchenko T., Grande-Perez A., Katul L., Vetten H.J.,
RA Gronenborn B.;
RT "High variability and rapid evolution of a nanovirus";
RL J. Virol. 84(18):9105-9117(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .992
FT /organism="Faba bean necrotic stunt virus"
FT /segment="DNA-S"
FT /host="Vicia faba"
FT /isolate="JKI-1998/99"
FT /mol_type="genomic DNA"
FT /country="Ethiopia:Holetta"
FT /db_xref="taxon:283824"
FT TATA_signal 245. .251
FT /gene="cp"
FT CDS 286. .804
FT /transl_table=1
FT /gene="cp"
FT /product="capsid protein"
FT /db_xref="InterPro:IPR006753"
FT /db_xref="UniProtKB/TrEMBL:D2N101"
FT /experiment="experimental evidence, no additional details
FT recorded"
FT /protein_id="CAG77491.1"
FT /translation="MVSNWNWSGKKGRRTPRRGYTRPFKSAVPTTRVVVHQSAVLKKDE
FT VSGSEIKPDGDVARYKIRKVMLSCTLRMRPGELVNYLIVKCSSPIVTWSAAFTAPALMV
FT KESCQDMITIIGKGKVESNGVAGSDCTKSFNKFIRLGAGISQTQHLYVVMYTSEAVKAV
FT LEHRVYIEV"
FT polyA_signal 838. .843
FT /gene="cp"
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SQ Sequence 992 BP; 281 A; 166 C; 222 G; 323 T; 0 other;
aj749897 Length: 992 07-SEP-2010 Type: N Check: 8585 ..
1 acccccgccc caggttcagc ggagtcattg agactccatc tcagccgttc
51 attgaataga cacgtgtaca atcaggatct gtgattcgtg aagcgaatct
101 gacggaagat tgtacacact aacgttggtg gccgacaatg cttttcttta
151 ctttttaaaa gtaaagaaag attcttttta ttattatatt atttgtaata
201 tattttatca ttgcttcgtc atgaagcaaa gaactttctc tctctataaa
251 taccagttct gttttcgttg ttcatacaac gaaaaatggt gagcaattgg
301 aattggtcag gcaagaaggg tagaagaaca cctcgtcgtg gttataccag
351 gcctttcaag tcagctgttc ctacaaccag agtcgtcgtt catcagtcag
401 ctgtattgaa gaaagatgaa gtgtctggta gtgaaattaa gcctgacggt
451 gatgttgcgc gttataaaat tcgtaaggtg atgttgagtt gtactctgag
501 gatgcgtccg ggagagttgg tgaattatct gatcgtcaag tgtagttcac
551 ctattgttac ttggtctgca gctttcacag cacctgctct aatggtgaaa
601 gagagttgtc aagatatgat tactatcata ggcaaaggta aagtagaatc
651 gaatggtgta gctggatcag attgtactaa atcattcaat aagttcatca
701 gattaggagc tggtattagt caaacacaac atttgtacgt tgtaatgtat
751 accagtgaag ctgttaaggc tgtattagaa catagagtct atattgaagt
801 ttaataccac tgtgtaatga agaacatatg aataatgaat aaatattgca
851 tttgatctat ttactccgcg tagcggtatg ttttgttgtt ttagtttcca
901 tatataccct tcattaatga aggggtaatg tctattttgc ccttatgtga
951 cgtcatttga tcccgtgctg agctggggcg gggcttagta tt