Sequence of DPV Faba bean necrotic stunt virus
Faba bean necrotic stunt virus segment DNA-N, complete sequence
ACC No: AJ749899
Dated: 2010-09-07 | Length: 980 | CRC: -754085387
ID AJ749899; SV 2; circular; genomic DNA; STD; VRL; 980 BP.
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AC AJ749899;
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DT 07-JAN-2010 (Rel. 103, Created)
DT 07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE Faba bean necrotic stunt virus segment DNA-N, complete sequence
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KW N gene; nuclear shuttle protein.
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OS Faba bean necrotic stunt virus
OC Viruses; ssDNA viruses; Nanoviridae; Nanovirus.
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RN [1]
RC revised by author [04-JAN-2010]
RP 1-980
RA Katul L.;
RT ;
RL Submitted (24-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL Katul L., Inst. Plant Virol.,Microbiol.& Biosafety, Fed. Biol. Res. Ctr. f.
RL Agr. & Forestry, Messeweg 11-12, Braunschweig 38104, GERMANY.
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RN [2]
RX DOI; 10.1128/JVI.00607-10.
RX PUBMED; 20592071.
RA Grigoras I., Timchenko T., Grande-Perez A., Katul L., Vetten H.J.,
RA Gronenborn B.;
RT "High variability and rapid evolution of a nanovirus";
RL J. Virol. 84(18):9105-9117(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .980
FT /organism="Faba bean necrotic stunt virus"
FT /segment="DNA-N"
FT /host="Vicia faba"
FT /isolate="JKI-1998/99"
FT /mol_type="genomic DNA"
FT /country="Ethiopia:Holetta"
FT /db_xref="taxon:283824"
FT stem_loop join(961. .980,1. .13)
FT /gene="N"
FT misc_feature join(974. .980,1. .2)
FT /note="conserved nonanucleotide at replication origin"
FT TATA_signal 283. .289
FT /gene="N"
FT CDS 336. .797
FT /transl_table=1
FT /gene="N"
FT /product="nuclear shuttle protein"
FT /function="transport"
FT /db_xref="InterPro:IPR008706"
FT /db_xref="UniProtKB/TrEMBL:D2N103"
FT /protein_id="CAG77482.1"
FT /translation="MADWFSSPLKTCTHVCDFPSLAGNPQQEIMCCDSMKDKLNDSRKV
FT LLVSCSVSFNGSFYGGNRNVRGQLQISMMEDDGVCRPIGYLPIGGYLYHNDYGYYEGQR
FT TFNLDIESQYLKKDEDYRRKFIITVLNENGLDSQCDLKMFIVHSLRIKV"
FT polyA_signal 818. .823
FT /gene="N"
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SQ Sequence 980 BP; 272 A; 169 C; 215 G; 324 T; 0 other;
aj749899 Length: 980 07-SEP-2010 Type: N Check: 3302 ..
1 acccccgccc caggttcagc ggagtcattg agactccatc tcagccgttc
51 attgaataga cacgtgtaca atcaggatct gtgatacgtg aagcgaatct
101 gacggaagat tgtacactat tctctatctc attaatacgc gtggcaagct
151 ctcattggat attgagttag tgggaatctt atcttttcac gcggtttgct
201 tttaacgcgc tttgctttta agtgggtcct atattacttt cgttccacga
251 aagcacgtgc tatcttctca aggaagcttt ggtatatatc gtctttaaat
301 acaaagcttc ttcttcgttt ggaagttgca gaaaaatggc agattggttt
351 tctagtcctt tgaagacatg tacacacgtc tgcgacttcc cttctcttgc
401 tggaaatcca cagcaagaga ttatgtgttg tgatagcatg aaagacaagc
451 tcaacgattc aagaaaggtt ctgcttgtta gttgcagtgt gagcttcaat
501 ggtagtttct atggtggaaa caggaacgtt cgtggtcagt tgcagatatc
551 tatgatggaa gacgacggtg tttgtcgacc aattggatat ttaccaattg
601 gtggttatct gtatcataat gattatggct attacgaagg tcagaggacg
651 tttaatctcg acatcgagtc tcagtatttg aagaaagatg aagattatag
701 aagaaaattt ataattaccg ttcttaatga gaacgggtta gatagtcagt
751 gtgatttgaa aatgtttatt gtacattcac tcagaatcaa agtgtaatta
801 gttgtgatga tgtaattaat aataattgtt attactgact aatatcattt
851 atattattat tattgttttt aattactctg cgaagctata tgtctcagcc
901 caataggccc aatagtctta aggcccaata gaagatgacg tcatttgatc
951 ccgtgctgag ctggggcggg gcttagtatt