Sequence of DPV Faba bean necrotic stunt virus
Faba bean necrotic stunt virus segment DNA-U4, complete sequence
ACC No: AJ749901
Dated: 2010-09-07 | Length: 987 | CRC: -820341186
ID AJ749901; SV 2; circular; genomic DNA; STD; VRL; 987 BP.
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AC AJ749901;
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DT 07-JAN-2010 (Rel. 103, Created)
DT 07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE Faba bean necrotic stunt virus segment DNA-U4, complete sequence
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KW hypothetical protein; U4 gene.
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OS Faba bean necrotic stunt virus
OC Viruses; ssDNA viruses; Nanoviridae; Nanovirus.
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RN [1]
RC revised by author [04-JAN-2010]
RP 1-987
RA Katul L.;
RT ;
RL Submitted (24-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL Katul L., Inst. Plant Virol.,Microbiol.& Biosafety, Fed. Biol. Res. Ctr. f.
RL Agr. & Forestry, Messeweg 11-12, Braunschweig 38104, GERMANY.
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RN [2]
RX DOI; 10.1128/JVI.00607-10.
RX PUBMED; 20592071.
RA Grigoras I., Timchenko T., Grande-Perez A., Katul L., Vetten H.J.,
RA Gronenborn B.;
RT "High variability and rapid evolution of a nanovirus";
RL J. Virol. 84(18):9105-9117(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .987
FT /organism="Faba bean necrotic stunt virus"
FT /segment="DNA-U4"
FT /host="Vicia faba"
FT /isolate="JKI-1998/99"
FT /mol_type="genomic DNA"
FT /country="Ethiopia:Holetta"
FT /db_xref="taxon:283824"
FT TATA_signal 285. .291
FT /gene="U4"
FT CDS 364. .684
FT /gene="U4"
FT /product="hypothetical protein"
FT /db_xref="UniProtKB/TrEMBL:C7DLN9"
FT /protein_id="CAG77484.1"
FT /translation="MECRFFISIILFVVLLNPSLIINMVLGYVLGSLFRSNYSRLKKLL
FT SGNKNENREEEDEHISQMKNPFEDAESDVLQHLKTLGLETKVEGDDLEYLQRLWESMSS
FT KK"
FT CDS 433. .684
FT /gene="U4"
FT /product="hypothetical protein"
FT /db_xref="UniProtKB/TrEMBL:D2N106"
FT /protein_id="CAG77485.1"
FT /translation="MVLGYVLGSLFRSNYSRLKKLLSGNKNENREEEDEHISQMKNPFE
FT DAESDVLQHLKTLGLETKVEGDDLEYLQRLWESMSSKK"
FT polyA_signal 680. .685
FT /gene="U4"
FT /note="short variant"
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SQ Sequence 987 BP; 282 A; 173 C; 203 G; 329 T; 0 other;
aj749901 Length: 987 07-SEP-2010 Type: N Check: 9063 ..
1 acccccgccc caggttcagc ggagtcattg agactccatc tcagccgttc
51 attaaatgga cacgtgtaca atcaggatct gtgattcgtg aagcgaatct
101 gacggaagat tgtacacttt atctcttcac gcgttttgaa gctactgttg
151 attatgcaag tggacgatgg tccccacata tatatttaaa acgacaacag
201 ctgtatacag ctgtattgat gtgacgtata taattaaata attatttaat
251 tatgaggatt gtcctgcacg cttatgttgt cgtctataaa accttctcta
301 ctgaagaacc tgtctctgaa tttactttct ctctcttctg tgtagaagag
351 agataagcag gttatggaat gtaggttctt catctctatt attttattcg
401 tcgtgctgct gaatccttct ctgataatta atatggttct cgggtatgtt
451 cttggctctt tattcagaag taattattcc agattaaaga agttactgtc
501 aggtaataag aacgagaacc gcgaagaaga agacgaacat atatcccaga
551 tgaagaatcc gttcgaggat gctgaatcag atgtattgca acatctaaag
601 actctgggtc tggaaacaaa ggttgaaggc gatgatcttg aatatttaca
651 gcgattgtgg gaatctatga gtagtaagaa ataaatatgt ttacccaagt
701 aattgtaaat aggtaataac agctcacgtc atgcttcatt cctattggtc
751 agtctattgg gccttgagag caattgggcc tattaagccc attaagtcag
801 tcagatatat tgtatttgta atattgttaa tcagtcaata aatattaatt
851 atttttcatt tactccgcgt agcggtatgt taaatatttt attgccatat
901 atacccttca ttaatgaagg ggtaatgtct attttgtcct tgtgacgtca
951 tttgatcccg tgctgagctg gggcggggct tagtatt