Sequence of DPV Lily symptomless virus

Lily symptomless virus cp gene for coat protein, genomic RNA, isolate LSV-SL

ACC No: AJ780923

Dated: 2005-03-30 | Length: 882 | CRC: -582699181

                !!NA_SEQUENCE 1.0
ID   AJ780923   standard; genomic RNA; VRL; 882 BP.
XX
AC   AJ780923;
XX
SV   AJ780923.2
XX
DT   29-JUN-2004 (Rel. 80, Created)
DT   30-MAR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Lily symptomless virus cp gene for coat protein, genomic RNA, isolate
DE   LSV-SL
XX
KW   coat protein; cp gene.
XX
OS   Lily symptomless virus (LSV)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RC   revised by [3]
RA   Singh A.K.;
RT   ;
RL   Submitted (17-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   Singh A.K., Floriculture Division, Inst Himalayan Bioresource Technology,
RL   P.O.Box No. 6, Palampur, Himachal Pradesh - 176 061, INDIA.
XX
RN   [2]
RA   Singh A.K., Hallan V., Verma N., Zaidi A.A.;
RT   "Natural occurrence of Lily symptomless virus on spider lily";
RL   Plant Pathol. 54(2):255-255(2005).
XX
RN   [3]
RP   1-882
RA   Singh A.K.;
RT   ;
RL   Submitted (01-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   Singh A.K., Floriculture Division, Inst Himalayan Bioresource Technology,
RL   P.O.Box No. 6, Palampur, Himachal Pradesh - 176 061, INDIA.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .882
FT                   /country="India:Himachal Pradesh, Palampur"
FT                   /db_xref="taxon:12173"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Lily symptomless virus"
FT                   /isolate="LSV-SL"
FT                   /specific_host="Hymenocallis littoralis (spider lily)"
FT   CDS             7. .882
FT                   /codon_start=1
FT                   /db_xref="GOA:Q6H8I4"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProt/TrEMBL:Q6H8I4"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="CAG47103.2"
FT                   /translation="MQSRPEQESGSASETPARGRPTPSDAPRDEPTNYNNNAESLLEQR
FT                   LTRLIEKLNAEKHNSNLRNVAFEIGRPSLEPTSAMRRNPANPYGRFSIDELFKMKVGVV
FT                   SNNMATTEQMAKIASDIAGLGVPTEHVASVILQMVIMCACVSSSAFLDPEGSIEFENGA
FT                   VPVDSIAAIMKKHAGLRKVCRLYAPIVWNSMLVRNQPPADWQAMGFQYNTRLAAFDTFE
FT                   NVTNQAAIQPVEGIIRRPTSAEVIAHNAHKQLALDRSNRNERLGSLETEYTGGVQGADF
FT                   VRNGKYANNG"
XX
SQ   Sequence 882 BP; 247 A; 231 C; 232 G; 172 T; 0 other;

 AJ780923  Length: 882  April 12, 2005 08:37  Type: N  Check: 7021  ..

       1  ggatccatgc aatcaagacc agaacaagaa tccggctctg caagcgagac
      51  ccctgcacgt ggcaggccca cacccagtga tgcaccaaga gacgagccca
     101  ccaattacaa taacaacgct gagtcactgt tagagcaacg actaacccgg
     151  ctgattgaga agctcaatgc tgaaaagcac aattccaatc tgcgaaatgt
     201  ggctttcgag atcgggaggc cctcgctgga acccacgagt gccatgcgaa
     251  ggaatcctgc gaacccctac gggagattct caattgacga actcttcaag
     301  atgaaggttg gcgtcgtatc taacaacatg gcaaccactg aacaaatggc
     351  caagatagcg tcagacatcg cagggcttgg agtaccaacg gagcacgtcg
     401  catcagtaat attgcaaatg gtcatcatgt gtgcttgcgt gagcagttcg
     451  gcgttccttg accctgaggg cagcattgag tttgagaatg gagcggtgcc
     501  cgtcgactcc atcgctgcga tcatgaagaa gcacgctgga ctgcggaaag
     551  tctgccggct ctatgcccct atcgtgtgga acagcatgct tgtgcgaaat
     601  caaccaccag ctgattggca agctatgggc ttccaataca atacgcggtt
     651  agcagctttt gacaccttcg aaaacgtgac taaccaggcg gctatccaac
     701  ctgtcgaggg gatcatcagg cgacccactt ctgctgaggt cattgcccac
     751  aacgcgcaca agcaattagc cctggatagg tcaaaccgca atgagcgtct
     801  ggggagtctg gaaaccgaat acaccggtgg ggtacaagga gctgatttcg
     851  tccgaaatgg aaaatacgca aataatggat ga