Sequence of DPV Sweet potato chlorotic fleck virus

Sweet potato chlorotic fleck virus CP gene for coat protein and NB gene for putative nucleic acid binding protein, genomic RNA, isolate Tar

ACC No: AJ781296

Dated: 2005-07-02 | Length: 1578 | CRC: -341257539

                !!NA_SEQUENCE 1.0
ID   AJ781296   standard; genomic RNA; VRL; 1578 BP.
XX
AC   AJ781296;
XX
SV   AJ781296.1
XX
DT   02-JUL-2005 (Rel. 84, Created)
DT   02-JUL-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Sweet potato chlorotic fleck virus CP gene for coat protein and NB gene for
DE   putative nucleic acid binding protein, genomic RNA, isolate Tar
XX
KW   coat protein; CP gene; NB gene; nucleic acid binding protein.
XX
OS   Sweet potato chlorotic fleck virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-1578
RA   Mukasa S.B.B.;
RT   ;
RL   Submitted (02-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   Mukasa S.B.B., Dept Plant Biology and Forest Genetics, Uppsala Genetics
RL   Center, SLU, Box 7080,, Uppsala, SE 750 07, SWEDEN.
XX
RN   [2]
RA   Mukasa S.B., Tairo F.D., Tugume A.K., Valkonen J.P.;
RT   "Molecular detection and vector transmission of Sweet potato chlorotic
RT   fleck virus";
RL   Unpublished.
XX
RN   [3]
RA   Mukasa S.B.;
RT   "Genetic variability and interactions between three genera of sweet potato
RT   infecting viruses";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1578
FT                   /country="Tanzania:Tarime District"
FT                   /db_xref="taxon:263004"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Sweet potato chlorotic fleck virus"
FT                   /isolate="Tar"
FT                   /isolation_source="Sweet potato"
FT   CDS             29. .1141
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAH03136.1"
FT                   /translation="MFAGESQEQFKERLDKYNRIRGEARDEGKSSSEVKALLDREVVED
FT                   KKRFANKEPTKNSSPQAFQGHILGAPMAAKEADAMDKVESSKGKEKAGGQTATLEGLNE
FT                   VKAAQGEISDQQLMKHDALIKWYMENYRPSDVVNPLMQSGDKHVTLSDNLKEDAANIYS
FT                   RPNFNTLLKWNREPVSQSIATAEDIAQIEAMLVGLGIPQERVRTAILDIVLYAAHSSSS
FT                   PQQLYEGDIDFRDANFKEAISRSSVAAVIKDKSTIRKVCRLFAPVVWSYMIINNEPPSG
FT                   WQAKGFPENAKFAAFDTFDFVTNHAAIKPLEGIARPPNSVEYIAAQTSKRILIDKARRN
FT                   EKLSNYEASVTGGQQACEIKTELKGNGKCK"
FT   CDS             1125. .1526
FT                   /gene="NB"
FT                   /product="putative nucleic acid binding protein"
FT                   /protein_id="CAH03137.1"
FT                   /translation="MGSASERPPNFVATFLYGRGLLCDWDCCLLISSIVSNYNKDMRTY
FT                   KFFACGQSKSAIKRRARRMQICPRCAKYECGKRCEPNTYSQFQVKELVTVGVNRYTTEN
FT                   ITKKGTNVRRHCKNELEFIKYESLKVKPK"
FT   3'UTR           1527. .1578
XX
SQ   Sequence 1578 BP; 512 A; 293 C; 396 G; 377 T; 0 other;

  AJ781296  Length: 1578  July 5, 2005 08:57  Type: N  Check: 4520  ..

       1  gtctttagat tgtgagattt aaattgaaat gtttgctggg gagagtcagg
      51  aacagtttaa agaaagattg gacaaatata atagaatcag gggagaggca
     101  agagacgagg ggaagagtag ctctgaggtg aaggcactgt tagatcgaga
     151  agtggtagag gacaagaaga gatttgcaaa caaggaacca accaagaaca
     201  gctcacctca agcgtttcaa ggtcacatac ttggagcacc tatggcggcg
     251  aaggaggctg atgcaatgga taaagtggaa tcaagcaaag gtaaggagaa
     301  agctggaggg caaacagcca cacttgaagg attgaatgag gtgaaggccg
     351  ctcagggaga gatatccgat cagcaattaa tgaagcacga tgcattgatc
     401  aaatggtaca tggaaaacta cagaccttct gatgtagtta atcctctcat
     451  gcaaagtgga gataagcacg tgacactcag cgacaatttg aaggaggatg
     501  cagccaacat atacagcagg cccaatttca acactcttct aaagtggaac
     551  agggagcccg tgagtcaaag cattgcaaca gctgaggata tagctcaaat
     601  tgaagcgatg cttgttggtt tgggcatacc acaagagaga gtgaggacag
     651  ctattctgga tattgttctc tatgctgctc actcaagctc ctcaccccaa
     701  caattgtacg agggtgacat agactttcgc gatgcgaatt tcaaagaggc
     751  catatctaga tcctctgtgg ccgctgtaat caaggacaaa tccactatta
     801  gaaaagtctg tcgccttttt gcacctgtgg tttggagcta tatgataatc
     851  aacaatgaac ccccatcagg gtggcaggct aaaggcttcc cagaaaatgc
     901  aaagttcgct gccttcgaca cttttgattt cgtgacaaac catgccgcta
     951  tcaaacccct tgagggcatt gctaggcccc caaattctgt ggaatacata
    1001  gctgctcaaa caagcaagag gatccttatt gacaaagctc gtagaaatga
    1051  gaagctcagc aattatgagg cgagtgtgac aggagggcag caagcatgtg
    1101  aaatcaagac cgaacttaaa ggcaatggga agtgcaagtg agagacctcc
    1151  aaatttcgtt gctacctttc tttatggccg cgggctgtta tgtgattggg
    1201  attgttgtct tttgatttct agtatagtta gtaactacaa taaggacatg
    1251  aggacctaca agttcttcgc ttgtggccaa tcaaaatcgg ccattaagcg
    1301  gagggctagg aggatgcaaa tttgccccag gtgtgctaaa tatgagtgtg
    1351  gtaagaggtg tgaaccaaat acctatagtc agtttcaggt gaaggaattg
    1401  gtcactgttg gtgtgaatag gtacactacc gaaaacatca caaagaaagg
    1451  gaccaatgtc cgacgccatt gtaaaaatga attagaattt attaaatatg
    1501  aaagtcttaa ggtaaagcct aaataataaa taaaccatta ggactataaa
    1551  ctttgcatgt tttaaagtac ttttgagc