Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus partial mRNA for polyprotein, isolate Tar1

ACC No: AJ781784

Dated: 2005-03-29 | Length: 1814 | CRC: -852641658

                !!NA_SEQUENCE 1.0
ID   AJ781784   standard; genomic RNA; VRL; 1814 BP.
XX
AC   AJ781784;
XX
SV   AJ781784.1
XX
DT   29-MAR-2005 (Rel. 83, Created)
DT   29-MAR-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Sweet potato feathery mottle virus partial mRNA for polyprotein, isolate
DE   Tar1
XX
KW   coat protein; CP; NIb protein; nuclear inclusion body protein; polyprotein.
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1814
RA   Tairo F.;
RT   ;
RL   Submitted (07-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   Tairo F., Plant Biology and Forest Genetics,, Swedish Univ of Agric
RL   Sciences (SLU), Genetic Centre, Box 7080, SE 750 07, Uppsala, SWEDEN.
XX
RN   [4]
RA   Tairo F., Mukasa S.B., Jones R.A.C., Kullaya A., Rubaihayo P.R.,
RA   Valkonen J.P.T.;
RT   "Unravelling the genetic diversity of the three main viruses involved
RT   inSweet Potato Virus Disease (SPVD), and its practical implications.";
RL   Mol. Plant Pathol. 6(2):199-211(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1814
FT                   /country="Tanzania:Tarime1"
FT                   /db_xref="taxon:12844"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /isolate="Tar1"
FT                   /isolation_source="Ipomea batatas"
FT   CDS             <1. .1593
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAH03750.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANG
FT                   DDLLLAMRPDTAHLLDKFGECFSELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKL
FT                   EPERIVSILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELAR
FT                   NGKAPYIAETALKALYTGVQPNASELSAYTRVLKEMYDDSMLQENDLEVYHQSNERTEF
FT                   KDAGANPPAPKPKDIPPPPTITEITDPEDPKQAALKAARAKQPAVIPESYGRDTSKEKE
FT                   SIVGTSSKGVRDKDVNVGTVGTFVVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQF
FT                   EVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDG
FT                   DEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLA
FT                   RYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVT
FT                   RNIHNLLGMRGVQ"
FT   mat_peptide     <1. .645
FT                   /note="NIb"
FT                   /product="nuclear inclusion body protein"
FT   mat_peptide     646. .1590
FT                   /note="CP"
FT                   /product="coat protein"
FT   3'UTR           1594. .1814
XX
SQ   Sequence 1814 BP; 565 A; 343 C; 430 G; 476 T; 0 other;

 AJ781784  Length: 1814  April 11, 2005 10:46  Type: N  Check: 3858  ..

       1  ggcaataata gtggtcagcc atctactgtg gttgacaata cacttatggt
      51  tgtgttagca gttcactaca cattgctgaa actaggaatc caagaaagcg
     101  agtttgataa atgctgtgtc tttttcgcaa atggtgatga tttgttgttg
     151  gcaatgaggc cagatacagc ccatttactg gataagtttg gtgaatgttt
     201  ttctgaatta ggactcaatt atgacttttc atcacgaaca aataagaagg
     251  aagatctgtg gtttatgtca cactgtggcg tgaaacgtga tggaatattt
     301  attccgaagt tagagcctga aaggattgtt tcaattcttg aatgggatcg
     351  ttcacacgag ccaattcatc gactagaagc aatatgtgcc gcgatggtgg
     401  aatcatgggg ttatgatgaa cttcttcatc atattaggaa attctatgca
     451  tgggttttgg accaagcccc atacaacgaa ctagcacgaa atgggaaagc
     501  accatacata gctgaaactg cactcaaagc actctatact ggtgttcaac
     551  ctaatgcttc tgaattgagt gcgtatacga gagtgctcaa agaaatgtat
     601  gatgacagta tgctccaaga gaatgatttg gaggtatatc accaatctaa
     651  tgagcgcact gaatttaaag atgcaggagc gaaccctcca gcccctaagc
     701  caaaggacat tcctccacca cccacaataa ctgagatcac tgatccagag
     751  gacccgaagc aggcagcttt gaaagctgca cgagcaaagc aacccgcagt
     801  cattccagaa tcatatggac gagacacaag caaagaaaag gaatcaatag
     851  tagggacatc atcaaagggt gtgagggata aggatgtgaa tgttggcacc
     901  gttggtacat ttgttgtgcc acgtgtcaag atgaatgcaa acaagaaaag
     951  gcaaccaatg gtcaatggaa gggccattat aaatttccag cacttgtcaa
    1001  catatgaacc agagcagttt gaggttgcaa acacccgttc gacccaagag
    1051  caattccaag catggtatga gggagttaaa ggagactacg gtgttgacga
    1101  cacaggaatg ggaatcctat tgaatggact gatggtttgg tgcattgaaa
    1151  atggcacatc cccaaatata aatggtgtgt ggacaatgat ggacggtgat
    1201  gagcaagtga catacccaat taaaccatta ttggatcatg cagtgcctac
    1251  ttttaggcag attatgacgc acttcagtga cgttgctgaa gcctatatag
    1301  aaatgcgaaa ccgtacaaag gcatacatgc caaggtatgg tctacaacgt
    1351  aatttgactg atatgagtct tgcgcgatat gcatttgatt tttacgagct
    1401  gcattcaact acacctgcac gtgctaaaga agcacattta cagatgaagg
    1451  cagccgcact taagaatgcg cgaaatcggt tgtttggttt ggacggaaac
    1501  gtctccacgc aagaagaaga tacggagagg cacacgacaa ctgatgttac
    1551  tagaaatata cataacctct taggaatgag gggtgtgcaa tagggcatcc
    1601  tctgcactgt agcttatact tatgttatct ttagtatgcc tttaatttaa
    1651  attcgtgtct ttcagtcccg aaggcgatgg ttgaatgcat aacatggtgg
    1701  gattatatct cggttattgt atttgagaag tcacctttct attacgtatc
    1751  ataagggact cttaaaagtg aggagtacct cgtaagaaaa gcctttttgg
    1801  ttcgtgatcg agcc