Sequence of DPV Turnip mosaic virus
Turnip mosaic virus partial gene for polyprotein, genomic RNA, isolate YN1
ACC No: AJ831801
Dated: 2008-04-01 | Length: 1374 | CRC: 1606482069
ID AJ831801; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC AJ831801;
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DT 20-SEP-2004 (Rel. 81, Created)
DT 01-APR-2008 (Rel. 95, Last updated, Version 3)
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DE Turnip mosaic virus partial gene for polyprotein, genomic RNA, isolate YN1
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KW HC protein; polyprotein.
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OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1374
RA Zhou X.;
RT ;
RL Submitted (15-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL Zhou X., Zhejiang University, Institute of Biotechnology, Kaixuan Road 268,
RL Hangzhou, Zhejiang, 310029, CHINA.
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RN [2]
RA Shi M., Li H.Y., Schubert J., Zhou X.;
RT "Sequence analysis of cp and hc-pro genes of turnip mosaic virus isolates
RT from china";
RL Acta Virol. 52:59-62(2008).
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FH Key Location/Qualifiers
FH
FT source 1. .1374
FT /organism="Turnip mosaic virus"
FT /specific_host="Brassica chinensis"
FT /isolate="YN1"
FT /mol_type="genomic RNA"
FT /virion
FT /db_xref="taxon:12230"
FT CDS <1. .>1374
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="GOA:Q659N8"
FT /db_xref="InterPro:IPR001456"
FT /db_xref="UniProtKB/TrEMBL:Q659N8"
FT /protein_id="CAH55685.1"
FT /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPRFKHAVQILDRYEQ
FT SLSSANENYQDFAEIQSISDGIEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT RYLKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGERGYHAKRFFSN
FT YFEIIDPKKGYTQYETRVVPNGSRKLAIGKLIVPTNFEVLREQMKGEPVEPYPVTVECV
FT SKLQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDV
FT ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT "
FT mat_peptide <1. .>1374
FT /product="HC protein"
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SQ Sequence 1374 BP; 441 A; 296 C; 329 G; 308 T; 0 other;
aj831801 Length: 1374 01-APR-2008 Type: N Check: 7758 ..
1 agtgcagcag gagccaactt ctggaaaggc ttcgatagat gcttcctcgc
51 ataccgtagt gacaatcgcg aacatacatg ctattcaggg ttagatgtca
101 ctgagtgcgg cgaggtggca gcactgatgt gtttggctat gttcccatgc
151 ggaaagataa cctgccctga ctgtgtaaca gatagtgagc tatcccaagg
201 acaagcaagc ggaccatcta tgaagcacag gttgacgcag ctgcgcgatg
251 tcatcaagtc aagctaccca cgcttcaagc atgcagtgca gatactagat
301 aggtatgagc aatcactgag tagtgcgaac gagaactacc aagatttcgc
351 agaaatccag agtataagcg atggaattga gaaagctgca ttcccacacg
401 tcaacaagct aaacgcaata ttgattaaag gggccacagc gacaggggag
451 gaattctcgc aggctacgaa gcatttgctt gagatagcac gatacctgaa
501 aaacagaact gagaacattg agaagggttc actgaagtct tttcgcaaca
551 agatttctca gaaagcgcac atcaacccaa cactaatgtg cgacaaccag
601 ctcgatagaa atggcaattt catatggggt gagagagggt atcatgcaaa
651 acgattcttc agcaactact ttgagataat cgatccaaag aaaggctaca
701 cccaatacga gacaagagtg gtaccaaatg ggtcacggaa acttgcaatc
751 ggcaaactaa tagtcccaac gaacttcgaa gtcttaaggg aacagatgaa
801 aggcgaaccg gtagaaccgt acccagtaac agtcgaatgt gtgagtaagt
851 tacagggtga cttcgtccac gcatgttgtt gtgtcacaac agaatcaggc
901 gacccagtct tgtctgaaat caaaatgcca actaaacacc acctggtaat
951 tggtaacagc ggcgatccaa agtacataga tctccctgag atcgaggaga
1001 ataaaatgta catagcgaaa gaaggttatt gttacatcaa catcttccta
1051 gctatgttgg taaatgtcaa ggagtcgcag gcaaaggagt tcacgaaagt
1101 tgttagggac aagctagtcg gcgaacttgg caagtggccc actctactag
1151 atgtagcaac cgcttgttat ttcctgaaag tgttttaccc agacgttgct
1201 aatgctgaat tgccacgcat gttagtggat cataagacaa agataattca
1251 tgtcgttgat tcatatgggt cactgtcaac tgggtatcac gtccttaaga
1301 caaacactgt ggaacaactc attaaattca cgagatgcaa tttggaatca
1351 agcttgaaac actaccgcgt cggt