Sequence of DPV Turnip mosaic virus
Turnip mosaic virus partial gene for polyprotein, genomic RNA, isolate YN2
ACC No: AJ831802
Dated: 2008-04-01 | Length: 1374 | CRC: -1720885371
ID AJ831802; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC AJ831802;
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DT 20-SEP-2004 (Rel. 81, Created)
DT 01-APR-2008 (Rel. 95, Last updated, Version 3)
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DE Turnip mosaic virus partial gene for polyprotein, genomic RNA, isolate YN2
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KW HC protein; polyprotein.
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OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1374
RA Zhou X.;
RT ;
RL Submitted (15-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL Zhou X., Zhejiang University, Institute of Biotechnology, Kaixuan Road 268,
RL Hangzhou, Zhejiang, 310029, CHINA.
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RN [2]
RA Shi M., Li H.Y., Schubert J., Zhou X.;
RT "Sequence analysis of cp and hc-pro genes of turnip mosaic virus isolates
RT from china";
RL Acta Virol. 52:59-62(2008).
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FH Key Location/Qualifiers
FH
FT source 1. .1374
FT /organism="Turnip mosaic virus"
FT /specific_host="radish"
FT /isolate="YN2"
FT /mol_type="genomic RNA"
FT /virion
FT /db_xref="taxon:12230"
FT CDS <1. .>1374
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="GOA:Q659N7"
FT /db_xref="InterPro:IPR001456"
FT /db_xref="UniProtKB/TrEMBL:Q659N7"
FT /protein_id="CAH55686.1"
FT /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLMQLRDVIKSSYPRFKHAVQILDRYEQ
FT SLSSTNENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT RYLKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGERGYHAKRFFSN
FT YFEIIDPKKGYTQYETRVVPNGSRKLAIGKLIVPTNFEVLREQMKGEPVEPYPVTVECV
FT SKLQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDV
FT ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT "
FT mat_peptide <1. .>1374
FT /product="HC protein"
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SQ Sequence 1374 BP; 438 A; 287 C; 333 G; 316 T; 0 other;
aj831802 Length: 1374 01-APR-2008 Type: N Check: 4454 ..
1 agtgcagcag gagccaactt ctggaaaggc ttcgatagat gctttctcgc
51 ataccgtagt gacaatcgcg agcatacatg ctattcaggg ttagatgtca
101 ctgagtgcgg cgaggtggca gcactgatgt gtttggctat gttcccatgc
151 ggaaagataa cctgtcctga ctgtgtaaca gatagtgaac tatcccaagg
201 acaagcaagc ggaccatcta tgaagcacag gttgatgcag ctgcgcgatg
251 tcatcaaatc aagctaccca cgcttcaagc atgcagtgca gatactagat
301 aggtatgagc aatcactgag cagtacgaac gagaactacc aagatttcgc
351 agaaatccag agtataagcg atggagttga gaaagctgca ttcccacatg
401 tcaacaagct aaacgcaata ttgatcaaag gggccacagc gacaggagag
451 gaattctcgc aggctacgaa gcatttgctc gagatagcac gatacctgaa
501 gaacagaact gagaacattg agaagggttc actgaagtcc tttcgcaaca
551 agatttccca gaaagcgcac atcaacccaa cactaatgtg tgacaaccag
601 ctcgatagga atggaaattt catatggggt gagagaggat accatgcaaa
651 acgattcttt agcaactact ttgagataat tgatccaaag aaaggctaca
701 cccagtatga aacaagagtg gtaccaaatg ggtcacggaa actcgcaatc
751 ggcaagctaa tagtcccgac gaactttgaa gtcttaaggg aacagatgaa
801 aggcgaaccg gtagaaccat acccagtaac agtcgagtgt gtaagcaagt
851 tacagggtga tttcgtccac gcatgttgtt gtgttaccac agaatcaggc
901 gatccagttt tgtctgaaat caaaatgcca actaaacacc acctagtgat
951 tggcaacagc ggtgatccaa agtacataga tctccctgag attgaggaga
1001 ataagatgta catagcgaag gaaggttatt gttacatcaa tatcttccta
1051 gctatgttgg tgaatgtcaa ggaatcgcag gcaaaggagt tcacgaaagt
1101 tgttagggac aagctggttg gcgaacttgg caagtggccc actctgttag
1151 atgtagcaac tgcctgttat ttcctgaaag tattttaccc agacgttgct
1201 aatgccgaat tgccacgcat gttggtggac cataagacaa agataattca
1251 tgtcgttgat tcatatgggt cactgtcaac tggatatcac gttcttaaga
1301 caaacactgt ggaacaactt atcaaattca cgagatgcaa tttggagtca
1351 agtttgaaac actaccgcgt cgga