Sequence of DPV Carnation etched ring virus
Carnation etched ring virus, complete genome, Indian isolate
ACC No: AJ853858
Dated: 2005-04-15 | Length: 7924 | CRC: -479131878
!!NA_SEQUENCE 1.0
ID AJ853858 standard; genomic DNA; VRL; 7924 BP.
XX
AC AJ853858;
XX
SV AJ853858.1
XX
DT 02-NOV-2004 (Rel. 81, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Carnation etched ring virus, complete genome, Indian isolate
XX
KW aphid transmission protein; coat protein; complete genome;
KW DNA-binding protein; inclusion body matrix protein; movement protein;
KW polyprotein.
XX
OS Carnation etched ring virus
OC Viruses; Retroid viruses; Caulimoviridae; Caulimovirus.
XX
RN [1]
RP 1-7924
RA Raikhy G.;
RT ;
RL Submitted (01-NOV-2004) to the EMBL/GenBank/DDBJ databases.
RL Raikhy G., Plant Virus Lab, Floriculture Division, Institute of Himalayan
RL Bioresource Tech., PO Box # 6, Palampur, Distt. Kangra, Himachal Pradesh
RL 176 061, INDIA.
XX
RN [2]
RA Raikhy G., Hallan V., Kulshrestha S., Verma R.R., Zaidi A.A.;
RT "Complete sequence of an Indian isolate of Carnation etched ring virus and
RT variability studies among Caulimoviurses";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7924
FT /country="India:Northern Himalayan region"
FT /db_xref="taxon:10640"
FT /mol_type="genomic DNA"
FT /virion
FT /organism="Carnation etched ring virus"
FT /isolate="Indian"
FT /lab_host="Dianthus barbatus"
FT /specific_host="Dianthus caryophyllus"
FT CDS 30. .989
FT /db_xref="GOA:Q5ZF42"
FT /db_xref="InterPro:IPR002626"
FT /db_xref="UniProt/TrEMBL:Q5ZF42"
FT /product="movement protein"
FT /protein_id="CAH68825.1"
FT /translation="MNSSIEKQNSEIPEKENEEFTFQDNSQGFELEFSTNKKTLSKIQK
FT ANLSLKTNDAFNISFLKAFSRKNHIYYHVNYKEFSVDICDTHGKNYLPLVTKSEIKKNL
FT DKIRDEKVRSTISDIHFGAIKVLIKARFREGINSPIKMALIDDRITDRQDSILGAAHGN
FT LVYGKFMFTVYPKYTTSILDQRLDRTLAFIHHFERNDLMRKGDKVFSITYLVAYALANS
FT HHSIDYKEKDAIEIDDVFSEIGSVKSPTFTELDPEPNSWAIDIAQGKQPIGFKPKPIVS
FT NNFLRFDKETSPSSSHQKSLEEISDKIDTLVVKLNNIS"
FT CDS 986. .1495
FT /db_xref="GOA:Q683L0"
FT /db_xref="InterPro:IPR004917"
FT /db_xref="UniProt/TrEMBL:Q683L0"
FT /product="aphid transmission protein"
FT /protein_id="CAH68826.1"
FT /translation="MSLTTYPHIYKKEQILNLKPLNKLSNDRKFFFSSVKGTLPGIISH
FT CNNINEILGRCYLGICKLNSFFGLSKDPSDKLSVSKSPSVYNLASKIFKEGGGNGDKHK
FT EQVKLLEKIAQDQVILSKKIDELQTQVKELSSKIEPEPLTKEDIKKTYETLSRIESGLK
FT GIIGIE"
FT CDS 1492. .1878
FT /db_xref="GOA:Q683K9"
FT /db_xref="InterPro:IPR004986"
FT /db_xref="UniProt/TrEMBL:Q683K9"
FT /product="DNA-binding protein"
FT /protein_id="CAH68827.1"
FT /translation="MNLATIASEIEVVKTNQKTIESKIDQILAKIGSTPEESSNLESVA
FT AKIISDLTKEMKECHCNKEIVEILNKDKAIIPSPERDSIQKKLSEPQYTFPNFDVGNEG
FT MGSSTNPNALKWPPTEKPQPWPPR"
FT CDS 1875. .3356
FT /db_xref="GOA:Q5W1F2"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProt/TrEMBL:Q5W1F2"
FT /product="coat protein"
FT /protein_id="CAH68828.1"
FT /translation="MNREAILWKNINSIPEELTDKIIEVLSMEPNDKLRELDHNLILNK
FT QISEQIPEWIIPDSLSELSSEIDLNFVLEEQEVNDNNSQPSLEEEVVSESDVESMRSFN
FT IAMNRGEIGESSNKRPKREPDLFTSFGKIREDIGDKNPSLNILNLDCVNSPSDRKNKID
FT KWAAELGLVFLTNPEAYTTAPNAARARLAYMEHKSLGIVNRFIKSTQWTQMNGDILLNV
FT VSGLYTMFLGEDYTGNQEKTLEQERAKASLRLINLQLCDICSLQSFFCPYESNLYKLPQ
FT NEYPSLVKQYLAKIPIVGEKASKRFEEEASAATSYSLGFAHKLVNEELAKICELSKKQK
FT KLKRFNKNCCSTFEKPYEYGCKPSYSKKKKYSKKYKPKYTKYKVIREKKKFSPGKYFKP
FT KDKKSEKAKYCPKGKKTCRCWVCNIEGHYANECPNRQTSEKFKLIQIAENYGLEPIENP
FT YEDQQEICLLEQIQLSSSDSELDDTYEESSSEESE"
FT CDS 3353. .5323
FT /db_xref="GOA:Q5W1F1"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="UniProt/TrEMBL:Q5W1F1"
FT /note="contains: aspartic protease; endonuclease; reverse
FT transcriptase"
FT /product="polyprotein"
FT /protein_id="CAH68829.1"
FT /translation="MSLRNRTNPNSIYVKGILKFPGYKQLELHCYVDTGSSLCMASKYV
FT IPEEYWQTAEKPLNIKIANGKIIQLTKVCSKLPIRLGGERFLIPTLFQQESGIDLLLGN
FT NFCQLYSPFIQYTDRIYFHLNKQSVIIGKITKAYQYGVKGFLESMKKKYKVNRPEPINI
FT TSNQHLFLEEGGSNIEELCYEIQISKFSAIEEMLERVSSENPIDPEKSKQWMTATIELI
FT DPKTIVEVKPMSYSPSDREEFDKQIKEPLDLKVIKPSKSPHMSPAFLVENEAERRRGKK
FT RMVVNYKAMNKATKGDAHNLPNKDELLALVRGKKIYSSFDCKSGFWQVLLDKESQLLTA
FT FTCPQGHYQWNVVPFGLKQAPSIFQRHMQTAFNQHSKYCCVYVDDILVFSNTEEEHYIH
FT VLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDK
FT KQLQRSLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPK
FT LYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLA
FT VFRVIYKFSIYLTPCRFLIRSDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEH
FT IAGTKNVFADFLQENTLTNYV"
FT CDS 5424. .6914
FT /db_xref="GOA:Q5W1F0"
FT /db_xref="InterPro:IPR002609"
FT /db_xref="UniProt/TrEMBL:Q5W1F0"
FT /product="inclusion body matrix protein"
FT /protein_id="CAH68830.1"
FT /translation="MERHEQILKEIAFLELRLQSLKLELEFVGSSGSEQKGKIEPFRLN
FT SECSATPEQTATGKESSNPLMAISSPKADKKHSKASEVPSPHKTVKEFSEIPKDFLRPN
FT QGIQIPKKNEDHSSSSSKEEKGIQNPKKDFYVVYNGPYAGIYDHWGTAKKATNKIPGVS
FT YKKFKDMLSARTSADIYTNAQFGEKLKYIPGATTSPKSFAEALTTRPSNMKSLGKPKFI
FT KIEEDDDVGFNPEFDLKSFLYIYKYGRNLEEEHFLTDRAFTIDKKEISYLNFVNNSDPE
FT GILESFKAGLVRFIYPSTNLQELRLLPKVPRSSVQRFRKKCIKDSEKEIFLKIKSTIPC
FT WEDYHNGLDDLVSYRPNYLVQVGISKGVNYQPSQKMEATILREQWQNIAEDKAIEFFQA
FT IEDILSNEKIFIIYSDDRILIYSSSPKERTKEDLMAILNFQSEVSSCKLLGFHSDKICS
FT YLNKKASVGKPYSCPQKGKAVIASGPSFSVEDTLSDTG"
XX
SQ Sequence 7924 BP; 2930 A; 1463 C; 1439 G; 2092 T; 0 other;
AJ853858 Length: 7924 April 19, 2005 08:53 Type: N Check: 3475 ..
1 tggtatcaga gccatagtgc tcaaaaatca tgaattcctc tattgaaaaa
51 cagaattctg aaattcctga aaaggaaaat gaagagttta ctttccaaga
101 taactctcaa ggatttgaat tagagttttc taccaacaag aaaactttat
151 ctaaaattca aaaagctaat ctcagcttaa aaactaatga tgctttcaac
201 attagtttcc ttaaggcatt cagccgaaaa aatcatatct actaccacgt
251 gaattataaa gaattctctg tagatatatg tgatacgcat ggcaaaaact
301 atttaccatt agtcactaaa tctgaaatca agaagaatct tgataaaata
351 agggatgaga aagtaaggtc cactatctca gatatccact tcggagctat
401 taaagttcta ataaaagcga gattccgaga agggataaat tctccgataa
451 aaatggcgtt aatcgatgat agaatcaccg accgtcaaga cagtattcta
501 ggagccgcac atggaaacct agtctacggt aaatttatgt tcaccgtcta
551 ccctaagtat accacttcaa tcttagatca gaggttagac agaactctag
601 cgttcatcca tcactttgag cgcaacgatc tcatgagaaa aggagataag
651 gtctttagca ttacctacct agtagcttat gctttagcaa atagtcatca
701 ctcgatagac tacaaagaaa aagacgctat tgaaatagat gatgtctttt
751 ctgaaatagg atctgttaaa agcccaacct tcaccgagct tgacccagaa
801 cctaattctt gggctataga catagcacaa ggaaaacaac ccatagggtt
851 taaaccaaaa cctatagtta gcaataactt tcttaggttt gataaggaga
901 caagtccatc ttcgtctcat caaaaatcac tagaagaaat tagtgataaa
951 atagatacct tggtagttaa gttaaacaat atatcatgag tttaactacc
1001 tatcctcata tctataagaa agagcaaatt cttaacctta agccgcttaa
1051 taagctctca aatgacagaa agttcttctt tagctctgtt aaaggaactt
1101 tacctggcat aataagccac tgcaacaata tcaatgagat attaggcaga
1151 tgttatttag gaatctgtaa gctaaattca ttctttggat taagcaaaga
1201 ccctagtgac aaattaagtg ttagtaaatc accgtcagtt tacaaccttg
1251 cttccaaaat ttttaaggag gggggaggaa atggtgacaa acacaaagaa
1301 caagtaaaac tacttgaaaa aattgctcaa gatcaggtca tcttaagcaa
1351 aaagattgat gaactccaaa cccaggttaa ggaactctct agtaaaatag
1401 aaccagaacc tctaaccaag gaagacatca agaaaaccta tgaaacctta
1451 tccaggatag aatccggcct aaaaggaatt ataggaatag aatgaatctg
1501 gccaccatcg cgtcagaaat cgaggttgtc aaaaccaacc aaaagactat
1551 agagtctaaa atagatcaaa ttctagctaa aataggatca actcctgaag
1601 aaagctcgaa tcttgagtct gttgcagcaa aaattatttc agatcttact
1651 aaagaaatga aagaatgcca ctgcaataaa gaaattgttg aaatcctcaa
1701 caaagacaaa gctatcattc catctccgga acgagacagc atacaaaaga
1751 aattgagtga acctcaatac acatttccta actttgacgt cggaaatgaa
1801 ggcatgggat cttcaactaa tcccaacgct ttaaaatggc caccaacaga
1851 gaaacctcaa ccatggccgc caagatgaat agagaagcta ttctctggaa
1901 aaacatcaac agtatccctg aggaactgac tgataaaatc attgaagttc
1951 tatctatgga accaaatgat aaattaagag aattagatca taatctaatc
2001 ctcaataaac aaatcagtga acaaatccca gaatggatta ttcctgattc
2051 tctttctgaa ttatcttcag aaattgatct aaactttgtt ctcgaagagc
2101 aagaagttaa cgacaacaac agtcaacctt cgctagaaga agaagttgtg
2151 tcagaaagcg acgtagaatc tatgagatcc ttcaacatag ccatgaatcg
2201 tggagaaatt ggagaatcat ctaataaacg tccaaaaaga gaaccagact
2251 tgtttacaag ttttggaaaa atcagagaag acataggtga caaaaatcct
2301 agtttaaaca ttctaaactt agattgtgtc aacagtcctt ctgataggaa
2351 aaataagata gacaaatggg ccgcagaact tggcttagtc tttcttacaa
2401 acccagaagc ctatactaca gctcctaatg cagccagagc tagactagct
2451 tacatggaac ataagagctt aggaatagtc aacaggttta ttaaaagtac
2501 ccagtggact caaatgaatg gagacatcct tttaaatgta gtcagcgggt
2551 tatataccat gttcttagga gaagattaca ctggtaatca agaaaaaacc
2601 ctagaacaag aaagggccaa ggctagcctt aggcttatca atttacaact
2651 ttgtgacatt tgctcacttc agtcattttt ctgtccctac gagtcaaatc
2701 tctataagtt accccaaaat gagtacccta gcctagtaaa acaataccta
2751 gctaagatac ccatagttgg agaaaaagcc tcaaaaaggt ttgaggaaga
2801 agctagtgca gcaactagtt acagtttagg attcgctcat aaactagtta
2851 acgaagagct cgcaaaaatc tgtgaattat ccaaaaagca gaaaaagtta
2901 aaaaggttta acaagaattg ttgttctacc tttgagaaac cttatgaata
2951 tggatgcaag ccatcttatt ctaagaagaa aaaatactct aaaaagtata
3001 aacctaaata caccaagtac aaggttatta gggaaaagaa gaaattttca
3051 ccaggaaaat acttcaaacc aaaggataag aaaagcgaaa aagctaagta
3101 ctgtcctaaa ggaaagaaaa catgccgatg ttgggtatgt aatatagaag
3151 gtcattatgc aaacgaatgt cctaacagac aaacgtctga aaaattcaag
3201 ctaattcaaa tagctgaaaa ctatggacta gaacccatag aaaaccctta
3251 cgaggatcaa caagaaatct gtcttctaga acagatacaa ctatcaagtt
3301 cagatagtga attggatgat acttatgaag aaagttcatc tgaagaatcg
3351 gaatgagtct tagaaatagg acaaacccca attccattta tgtcaaagga
3401 attctcaaat tccctggcta caaacaactc gagctacact gttatgtaga
3451 cactggctca agtttgtgta tggcaagtaa atatgtcata ccagaagaat
3501 attggcagac tgctgaaaaa cctctcaata ttaagatcgc caatggcaag
3551 atcatacaat tgacaaaggt ttgtagcaaa ctaccaatac gtttgggagg
3601 agaacgattt ctcattccaa cattattcca acaggaaagt ggaatagatt
3651 tattgcttgg aaacaatttc tgtcagttat actcaccctt catccagtat
3701 actgatcgaa tttactttca tcttaacaag caaagcgtta tcataggaaa
3751 gataacaaaa gcataccaat atggtgtcaa aggattcctt gaatccatga
3801 aaaagaagta taaagttaat aggcctgaac caattaacat cacttcaaac
3851 caacatctct ttttagaaga gggggggagt aatatagaag aactatgtta
3901 cgaaatacaa attagcaaat tttcagccat tgaagaaatg ctagaaagag
3951 ttagttcaga aaatcctata gacccagaaa agtctaagca atggatgaca
4001 gcaaccatag aactcataga ccctaagacc atagttgagg ttaaacccat
4051 gagctatagt cctagtgata gagaagaatt tgacaaacag atcaaagaac
4101 ctctagatct aaaggttatc aaacctagca aatcacccca tatgtcccca
4151 gccttccttg ttgagaatga agcagagaga cgtagaggta aaaagagaat
4201 ggtcgtcaac tacaaggcta tgaataaagc cacaaaagga gacgctcata
4251 atcttccaaa caaggatgaa ttactcgccc ttgtaagagg aaagaagatt
4301 tacagctcat ttgactgtaa gtcaggattc tggcaagtat tgctagataa
4351 agaatcgcag cttctaaccg cgtttacgtg tcctcaaggt cactaccaat
4401 ggaacgtagt accatttggg ttaaagcaag caccaagcat ctttcaaaga
4451 cacatgcaaa cagcatttaa ccaacactcc aaatattgtt gtgtctatgt
4501 agatgacatc ctagtgttta gtaacacaga agaagaacat tacattcatg
4551 ttcttaacat tttgagaaga tgtgaaaaac ttggaataat actttccaaa
4601 aagaaagcac aactcttcaa agaaaagatt aatttcctag gattagaaat
4651 tgatcaagga acccattgtc ctcaaaacca tatcttagaa catattcata
4701 agttcccaga taggatagaa gacaaaaagc agttgcagag atctctagga
4751 attctcacat acgcatctga ttatattccg aagctagcct ctattaggaa
4801 acccttacag agtaagctta aagaagattc aacatggact tggaatgata
4851 ctgattctca gtatatggct aagatcaaaa agaatcttaa gagttttccg
4901 aagctctacc accctgaacc taacgacaaa ttggtaatcg aaaccgatgc
4951 atctgaagag ttctggggcg gaattctaaa ggctattcac aatagtcatg
5001 agtatatctg tcgatatgct tcaggcagtt tcaaagccgc cgaaagaaat
5051 taccatagca acgagaaaga gcttctcgca gttttcagag taatttataa
5101 attcagtatt tatctaaccc cttgcaggtt tttgattcgt tctgataata
5151 aaaacttcac ccatttcgtt aatataaact taaaaggtga tagaaaacaa
5201 ggtcgtctgg tacgatggca aatgtggtta tctcaatatg attttgatgt
5251 agaacatatt gcaggtacaa agaatgtttt tgcagatttt ctacaagaga
5301 atactctaac taattatgtt tagctttgca ggacattcag aggcattaaa
5351 ttgctatatt tagagcttaa tcgctcaaga taaacttgtt tatcagggct
5401 tgtttagcct cacaggtaca atcatggaac gtcatgaaca gatactaaaa
5451 gaaatagctt tcttagagct gagacttcag tccctaaaac tggagttaga
5501 atttgtagga tcctctggat ctgaacaaaa aggaaagatc gaacctttcc
5551 gcctaaacag cgaatgttcg gctactccgg agcaaacggc aaccggtaaa
5601 gagtcatcaa atccgttgat ggctatcagc tcgccaaaag ctgataagaa
5651 gcattctaag gcttcagagg ttcccagtcc tcacaaaact gttaaggaat
5701 tttctgaaat tccaaaggac tttttacgtc ctaaccaggg tattcaaatc
5751 cctaaaaaga atgaagatca ctcttcatct tcttcgaaag aagaaaaggg
5801 aattcaaaat cccaaaaaag acttttatgt tgtctacaat ggtccttatg
5851 caggtatcta tgatcattgg ggaacagcta aaaaagcaac aaataagata
5901 ccgggagtat cttataaaaa attcaaagat atgcttagtg caagaacttc
5951 agcagacatt tatacaaatg cccagtttgg agaaaaactc aagtatatcc
6001 caggagcaac tactagtcct aagagttttg cagaagcatt aactaccagg
6051 cctagtaata tgaagagttt aggaaaacct aaattcataa aaatagaaga
6101 agatgatgac gttggattca atccagaatt cgacttaaag agttttctat
6151 atatttacaa atacgggcga aatctggaag aagaacattt tctaacagat
6201 cgggccttta ccattgacaa aaaagaaatc tcgtatctta actttgtcaa
6251 caatagcgat ccagaaggaa ttttggaaag ctttaaagca ggattagtaa
6301 gatttattta cccaagtact aatcttcaag aactaaggtt actacccaag
6351 gttcccaggt cttcagtgca aagattcaga aagaagtgca ttaaagactc
6401 agaaaaggaa attttcctaa aaattaaaag cactatccct tgctgggaag
6451 actatcacaa tggtctggat gatttggtca gttatcgtcc aaattatcta
6501 gtgcaggttg gcataagcaa aggtgtcaac tatcaaccgt cgcaaaagat
6551 ggaagccaca attctcagag aacaatggca aaatattgca gaggacaaag
6601 caattgaatt ctttcaagca attgaagata tcctcagcaa tgaaaagatt
6651 tttatcatct atagtgatga tagaattcta atctattcaa gtagtccaaa
6701 agaaaggact aaagaagatt taatggcaat cctcaacttc caatcagaag
6751 ttagcagctg caagctttta ggattccata gcgataagat atgttcttat
6801 ctaaacaaaa aagcaagtgt cggcaaacca tacagctgtc cacaaaaagg
6851 aaaggctgta atagcaagcg gacccagctt ctcagtggaa gatactttat
6901 cagacactgg ataaatgaat ggaccctacc acgattaaag aggagcgtct
6951 gtctaaagta aagtagatgc gtctttaata attcatctac tttagacgtc
7001 atgcatgacg tttaacatgc aatgtatcca gatcctccct ggctatataa
7051 agggagttaa ctttcattgt taaggcatcg aaaaattttc aagtctatct
7101 ctcaagaaaa acttagaaaa cttctttgtc ttaagagtca tgtgtaacta
7151 acttaagagt ggtgtgagag tcattagtag gagcaagctc tatgtgttga
7201 gcctaagtcc ttgctctaag tttgtaatga gttatgtata attatttcat
7251 ataaataaga aatcatacag tttgctacaa tatctcattg cctgtgaacc
7301 tggagtccgt ataaggtgtc cataacccaa gggttagtac cgccgaggca
7351 ggaggccgtt tagggaaaac aggtggtgga acaatcaaac cttggattgg
7401 tcagacagga cagagagtgt ggcaaggtat tggatactgc ttataatatg
7451 aataatttat gcattaactt ttacattctg agctaaggtc tgaagctaac
7501 aatggagttg tgcgtctgaa aatgataact cacgtcacat atttaaaaat
7551 atttggtaaa accgaattta aaaagagaaa gtctatgcgt agatttcaag
7601 ctaaacccgc agggttaaac aaaaggcttt ctgcctatta tctagactgt
7651 cacttccaca gtcaagaaaa ctatgagtta gcgtgtaatg aacgcattaa
7701 ctaatatagt cttaattgac atgaatatgc aggagtgctc tcactcttgt
7751 ttatcttctc ttaacgagat atttaaaaga caacgttcac attttcatga
7801 gcgttgcaaa gacttccgct gtgagaaaga atttctcata ttaaaagatg
7851 ctgtttccgc catcgcagct ctttcagaga gatcaaaaat tgatctttca
7901 aatcatcaag ggaccacccg taac