Sequence of DPV Rice yellow mottle virus
Rice yellow mottle virus complete genome, serotype S6, country Tanzania, Mangula
ACC No: AJ876793
Dated: 2005-04-15 | Length: 4444 | CRC: -142906769
!!NA_SEQUENCE 1.0
ID AJ876793 standard; genomic RNA; VRL; 4444 BP.
XX
AC AJ876793;
XX
SV AJ876793.1
XX
DT 20-FEB-2005 (Rel. 82, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Rice yellow mottle virus complete genome, serotype S6, country Tanzania,
DE Mangula
XX
KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1;
KW protease and VPg; RNA-directed RNA polymerase.
XX
OS Rice yellow mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN [1]
RP 1-4444
RA Winter S.;
RT ;
RL Submitted (19-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL Winter S., Plant Virus Division, DSMZ, c/o BBA, Messeweg 11/12, 38104,
RL GERMANY.
XX
RN [2]
RA Traore O.;
RT "Mechanisms of emergence of Rice yellow mottle virus inferred from large
RT scale and high-resolution phylogeographic studies";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4444
FT /country="Tanzania:Mangula"
FT /db_xref="taxon:31744"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Rice yellow mottle virus"
FT /isolation_source="Oryza sativa (rice)"
FT /serotype="S6"
FT CDS 81. .554
FT /db_xref="UniProt/TrEMBL:Q5F301"
FT /gene="ORF1"
FT /product="P1"
FT /function="putative movement and gene silencing
FT suppression"
FT /protein_id="CAI45861.1"
FT /translation="MTRLEVLIRPTEQTVAKANAVGYTHALTWVWHSQTWDVDSVNDPV
FT LRADFNPNGVGWVAVSFACTQCTAHYYTCEQVKFFTNIPSVHYDVVCADCERRVQQDDE
FT IDREHQERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRYDRYLNF"
FT CDS 606. .2423
FT /db_xref="GOA:Q5F300"
FT /db_xref="UniProt/TrEMBL:Q5F300"
FT /gene="ORF2a"
FT /product="protease and VPg"
FT /protein_id="CAI45862.1"
FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIALAGLIAAAIVSERLPVTAS
FT LWAIPSAIIANWIVLSAHESFSRFVEGVEVEPLSTLRYGKVQSAPRFDPSRDYVVDVSY
FT NGHVIPVILDFATATALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR
FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYRGHLKKVALDAPVIACDHPHIDCAFYE
FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC
FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS
FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQPSWADRFGDDSG
FT EDVDIETSHPVAPSISKTRRRRSKRIEQFVDAVSECSFSFESAHEGITPETSAYDHVPL
FT NCQGAGSSLRASPPLDGLSNSESTTGTPLATPSLPTECPSATLENRVSSLENMLGKVSA
FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSSHSKKGTQK
FT SPPGDASGTSGGSTTSSMKSKESSAKPAK"
FT CDS 2090. .3601
FT /db_xref="GOA:Q5F2Z9"
FT /db_xref="UniProt/TrEMBL:Q5F2Z9"
FT /EC_number="2.7.7.48"
FT /gene="ORF2b"
FT /product="RNA-directed RNA polymerase"
FT /protein_id="CAI45863.1"
FT /translation="MPFSYVGKSGVVFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS
FT KAELDSLILQAGRFNRTVCPPGLAEAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI
FT LCETGEVNSASSPGVPLAGLANSNGEVRKLGRDLVCLAVVERLNALASVDPRQHNWTPR
FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW
FT WQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN
FT RGSFSGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA
FT ELIGSPWCIAMGDDSVEGWIEGAQSKYALLGHTCKEYFPCKTRGRELVEFNFCSHLIRK
FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIEQYLRGIGRVSHKDGQEGQE
FT NQLQPKSARQEEPTSPRAFGGAPASTGTSGSGLPDIWDGSWSTIF"
FT CDS 3444. .4163
FT /db_xref="UniProt/TrEMBL:Q5F2Z8"
FT /gene="ORF4"
FT /product="coat protein"
FT /protein_id="CAI45864.1"
FT /translation="MARKGKKINSNQNQQGKKSRRPRGRSAEPRLQRAPVAQASRISGT
FT VPGPLSSNVWPINRSVEFLTDFKRSATSTEATILNCVPFNLPRVWSLARCYSLWRPTRW
FT DVVYLPEISAAAAGSIEMCYLYDYADTVPNDTGKMSRTAGFVTSSVWYGAEGCHLLTGG
FT SARNAVVASMDCSRVDWKRVTSSIPSGVDPNVVNTILPARLAVRSSIKPAVDDAPGKLY
FT AIVSMVLRDPVDPTLNT"
XX
SQ Sequence 4444 BP; 969 A; 1167 C; 1282 G; 1026 T; 0 other;
AJ876793 Length: 4444 April 19, 2005 08:54 Type: N Check: 3468 ..
1 acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg
51 ccgaacaatt gtagccacac tgcatcgtgt atgacacggt tggaagttct
101 tatacgaccg actgagcaga ctgtggcaaa agccaacgcc gtgggctata
151 cgcacgcact cacctgggtt tggcattctc agacctggga cgttgattct
201 gtgaacgatc cagttctcag agccgacttc aaccccaacg gggtgggctg
251 ggtggcagtg tcgtttgcct gtactcagtg cacggctcac tactacacgt
301 gtgagcaggt gaagttcttc accaacatcc cgtcggttca ttacgacgtg
351 gtgtgtgctg attgcgagcg ccgtgttcag caggacgacg agatcgaccg
401 tgagcaccaa gagcgcaacg cagagatttc tgcctgcaac gctcgagctt
451 tgagcgaggg aagaccagca agcctggtgt acctctctcg ggacgcttgt
501 gatattcctg agcactccgg aacgtgccgg tacgacaggt acctcaactt
551 ttgagggcca gcctgccgac atccaaggaa cggtcttggt tcagactaac
601 gcgggatggg ctcttctgtt gttggtcgct ttctcacacg caccaaggaa
651 acgacgaggg tggattccaa cctcctcatc gccttggctg ggttgatagc
701 ggccgcgata gtctcagagc gcctgcccgt gacggcgtca ttgtgggcaa
751 tcccctcagc tatcatagca aactggatcg tgctgtcagc tcacgagagc
801 ttcagccggt tcgtggaggg ggttgaggtt gagcctttgt ccacacttcg
851 gtatggtaag gttcaatccg ctccaaggtt cgatccctcc cgggactacg
901 tggtcgacgt ttcctacaac ggccatgtga tccctgtgat attggacttc
951 gccacggcga cagctctgtc ggttccccaa agagtaaacc ctggggtctc
1001 gatggaggcg agtcgtgggg ggctcccacc gacgtccgtc aaactcgaag
1051 atgtgccgcc gagcgttgtg gttttgtacc atgactctgt caggctaggc
1101 ctaggaacta gagtgcgaac tcctactggt cgtgatctcc tcatgaccaa
1151 tcaccatatc gccgctctag agcctaatgg gatcgcgtac aggggccacc
1201 ttaagaaagt ggctctggac gcgccagtca tcgcatgtga ccatccacac
1251 atagactgcg cgttttatga ggtccctccc aagatctggt ctctcttggg
1301 ggtcaagtct gccagtttga agccattggt taagcaaact gcggtgtcac
1351 tcttcggtgg ctcgtcatct actgacttct caagttgtgt tgggatagcc
1401 cagattgggg acaacccgtt cctgatacgg catcaaagca cgacttgcag
1451 tggatggtcg ggctccccgc tctaccacaa agggtgcgtg gttggtttac
1501 atataggtgc tgcggatggt tataatgtgg catctaatgt agcctggtac
1551 ttccatacct tcaagaagga agtagtcgtt gagtctcctt tcgagattta
1601 cggcaaattc cgagaagcta actctgagga gtatgacgaa agtctgcgac
1651 atggagtgca gtatgcggag tacgacttct ctggtgatac catccgggcg
1701 tcttccaaca cctgggtgcg tgagagagag aggtaccacg ctgaggaacg
1751 tcgtaagtcc ggccagccta gctgggcaga tcgttttggt gacgacagtg
1801 gcgaggatgt tgatatcgag acatcgcatc ccgtagcacc gtcaatatct
1851 aagacgcggc ggagacggtc aaagcgcatt gagcagttcg tcgatgcggt
1901 ttccgagtgt tccttctcgt tcgagtcagc tcacgagggg ataactccgg
1951 agacctctgc ttatgaccac gttcctttaa actgccaggg ggcgggctcg
2001 agcctacggg cgagtccgcc cttggacggc ttatccaact cggagagtac
2051 cactgggact cccttggcga ctccctccct tccgacggaa tgcccttcag
2101 ctacgttgga aaatcgggtg tcgtctttgg agaacatgct gggaaaagtg
2151 tctgcgcagc tgtcaaagac gcaatctcag tattcccaga tcttgaagga
2201 tttggctggc ctgagagggg aagtaaagca gagcttgact ccctcatcct
2251 ccaagccggc cggttcaaca gaacggtatg tccccccggg ctcgcggaag
2301 cagtccagtc actccaagaa aggtacccaa aagtcccccc caggcgatgc
2351 ctcagggacg agtggaggtt cgacgacatc ttcgatgaag tcgaaagaat
2401 cctctgcgaa accggcgaag tgaattccgc ttcctcgccg ggggtgccgc
2451 tagcgggcct cgccaactcc aatggtgagg tccgcaagct ggggagagac
2501 ttggtatgtt tagctgtggt agagcgactg aatgccttag cttcggttga
2551 cccccgccag cacaactgga cacccaggga gctggtagag aaaggtcttt
2601 gtgatcctgt gcgtttgttc gttaagaacg agccgcaccc acagaagaaa
2651 ttgcgtgaac gtcgattcag gctgatttcc tctgtttctc tagtcgacca
2701 gctggtggag cggatgcttt tcgggcctca gaacaacacc gagatctcaa
2751 cttggtggca gtggccctcg aagccgggca tgggtctgtt gactcgtgaa
2801 caaatccgct tggtgtggga cgatgtgttc cagaaacacc aggcccaccc
2851 tgcggctgag gcagacatat cggggtttga ctggtctgtt caggactggg
2901 agttgtggtc agacctcgcg atccgaatta acagagggag tttctccgga
2951 aacctcagga aagcggctat tagtcgttac tactgtttca tgaactctgt
3001 tttccaactc tcagatggaa ccctcattca gcaagagtta cccggattga
3051 tgaaatccgg ttcctattgc acctcctcca cgaattcacg catacgctgc
3101 cttatggctg agctcattgg ctcgccttgg tgcatcgcca tgggtgatga
3151 ctctgtggag gggtggattg agggggccca atccaagtac gctttgctgg
3201 gtcacacctg caaggagtac ttcccgtgta aaaccagggg ccgtgagctc
3251 gtggaattca atttctgttc acacttgatc aggaaggggc atgctgagct
3301 aacgtcatgg ccgaaggcgt tgtttcgctt tctgtctagc aagcatgagg
3351 attttgaaga tctgtgggtt gagcttcaca cgtgcggggt gtggggcagg
3401 atcgaacaat acctgcgtgg gatagggcga gtctcccaca aagatggcca
3451 ggaagggcaa gaaaatcaac tccaaccaaa atcagcaagg caagaagagc
3501 cgacgtcccc gcgggcgttc ggcggagccc cggcttcaac gggcaccagt
3551 ggctcaggcc tcccggatat ctgggacggt tcctggtcca ctatcttcta
3601 atgtctggcc gattaatcgc tccgtggaat tcctgacgga ttttaagcgg
3651 agcgccacat ccacagaagc gaccatactt aattgtgtgc cgtttaatct
3701 gccccgggtg tggagtcttg cacgctgtta ttccttgtgg aggccaacga
3751 ggtgggacgt cgtctatctc cctgagatta gtgcggcagc ggctggaagt
3801 attgagatgt gctatctcta cgactatgcc gacacagtcc caaatgacac
3851 gggcaagatg agcaggacgg cgggtttcgt cacctctagc gtttggtacg
3901 gcgcagaggg ctgccatttg ctaactggtg gctcagcacg aaatgccgtg
3951 gtcgcctcga tggactgttc ccgagtcgac tggaaacgcg tcactagttc
4001 tattcctagt ggcgtggatc ccaacgtcgt aaacaccata ctgccagcta
4051 ggctagctgt gcggtcgtcg attaaaccgg cggttgatga tgcgccagga
4101 aaactgtacg ccatcgtcag tatggtcctg cgggatccag ttgatccaac
4151 actcaatacg tgaactggat ctggtggaga taggtattgg caccagtgat
4201 gaccaacgga ttagctcaga gatcgactac cctgaaaagg atgttgagcg
4251 tttgtgaacg cgggcttaat cctaagaggc catactggcg cctatcccac
4301 gtgaggagtc gcactcacat caacccaaag cgacccatgc gctggatagt
4351 gcttacccgg ctggtttcgg agctgccggg aggacctttt cacactccga
4401 attctccacg tcttccgaga aaattctcgg gatgggtggg ggag