Sequence of DPV Rice yellow mottle virus

Rice yellow mottle virus mRNA for coat protein (ORF4 gene), isolate Tz22

ACC No: AJ885163

Dated: 2005-06-23 | Length: 720 | CRC: 1076119317

                !!NA_SEQUENCE 1.0
ID   AJ885163   standard; mRNA; VRL; 720 BP.
XX
AC   AJ885163;
XX
SV   AJ885163.1
XX
DT   23-JUN-2005 (Rel. 84, Created)
DT   23-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Rice yellow mottle virus mRNA for coat protein (ORF4 gene), isolate Tz22
XX
KW   coat protein; cp gene; ORF4.
XX
OS   Rice yellow mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN   [1]
RP   1-720
RA   Fargette D.;
RT   ;
RL   Submitted (17-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Fargette D., Dgpc, Ird, BP64501, 34394 Montpellier cedex 5, FRANCE.
XX
RN   [2]
RA   Traore O., Sorho F., Pinel A., Abubakar Z.;
RT   "Processes of diversification and dispersion of Rice yellow mottle virus
RT   inferred from large-scale and high resolution phylogeographic studies";
RL   Mol. Ecol. 0:0-0(0).
XX
RN   [3]
RA   Traore O., Sorho F., Pinel A., Abubakar Z., Banwo O., Maley J., Hebrard E.,
RA   Winter S., Sere Y., Konate G., Fargette D.;
RT   "Processes of diversification and dispersion of Rice yellow mottle virus
RT   inferred from large-scale and high resolution phylogeographic studies";
RL   Mol. Ecol. 14(7):2097-2110(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .720
FT                   /country="Tanzania"
FT                   /db_xref="taxon:31744"
FT                   /mol_type="mRNA"
FT                   /virion
FT                   /organism="Rice yellow mottle virus"
FT                   /isolate="Tz22"
FT   CDS             1. .720
FT                   /evidence=EXPERIMENTAL
FT                   /note="ORF4"
FT                   /product="coat protein"
FT                   /protein_id="CAI59710.1"
FT                   /translation="MARKGKKINSNQNQQGKKGRRPRGRSAEPRLQRAPVAQASRISGM
FT                   VPGPLSSNVWPVQRSVEFLMDFKRSATSADATIFNCVPFNLPRVWSLARCYSLWKPTRW
FT                   DVVYLPEVSAATAGSIEMCYLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLTGG
FT                   SARNAVVASMDCSRVDWKRVTSSIPSGVDPNVVNTILPARLAVRSSIKPAVDDAPGKLY
FT                   AIVSMVLRDPVDPTLNT"
XX
SQ   Sequence 720 BP; 153 A; 192 C; 211 G; 164 T; 0 other;

  AJ885163  Length: 720  June 28, 2005 08:34  Type: N  Check: 1134  ..

       1  atggccagga agggcaagaa aatcaactcc aaccaaaacc agcaaggcaa
      51  gaagggccgg cgtccccgtg ggcgttcggc ggagccccgg cttcaacggg
     101  ctccagtggc tcaggcctcc cggatatctg ggatggttcc tggtccacta
     151  tcttctaatg tctggccggt tcaacgctcc gtggaattcc tgatggattt
     201  taagcggagc gccacctcgg cagatgcgac catattcaac tgtgtgccgt
     251  tcaatctgcc ccgagtgtgg agtcttgcac gttgttactc cttgtggaag
     301  ccaacaaggt gggatgttgt ctacctccct gaggttagtg cagcgacggc
     351  tggaagtatt gagatgtgct atctctacga ctatgccgat acaatcccaa
     401  gtgacacggg taagatgagc aggacggcgg gcttcgtcac ctctagcgtc
     451  tggtacggcg cggagggctg ccatttgtta actggtggct cagcacggaa
     501  tgccgtggtc gcctcgatgg attgttcccg agtcgactgg aaacgcgtta
     551  ctagttcaat tcctagtggc gtggatccca acgtcgtaaa caccatactg
     601  ccagctaggc tagctgtgcg gtcgtcgatt aaaccggcgg ttgatgatgc
     651  accaggcaag ctgtatgcca tcgtcagtat ggtcctgcgg gatccggttg
     701  acccaacact caatacgtga