Sequence of DPV Ryegrass mosaic virus

Ryegrass mosaic virus partial gene for polyprotein, genomic RNA, isolate Ger

ACC No: AJ889241

Dated: 2007-03-21 | Length: 1785 | CRC: 836155837

                
ID   AJ889241; SV 1; linear; genomic RNA; STD; VRL; 1785 BP.
XX
AC   AJ889241;
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DT   21-MAR-2007 (Rel. 91, Created)
DT   21-MAR-2007 (Rel. 91, Last updated, Version 1)
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DE   Ryegrass mosaic virus partial gene for polyprotein, genomic RNA, isolate
DE   Ger
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KW   polyprotein.
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OS   Ryegrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Rymovirus.
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RN   [1]
RP   1-1785
RA   Adams M.J.;
RT   ;
RL   Submitted (08-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
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RN   [2]
RA   Shi Y.H., Hong X.Y., Chen J., Adams M.J., Zheng H.Y., Lin L., Qing B.X.,
RA   Chen J.;
RT   "Detection and classification of potyviruses from China and elsewhere";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1785
FT                   /organism="Ryegrass mosaic virus"
FT                   /isolate="Ger"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /virion
FT                   /db_xref="taxon:40666"
FT   CDS             <1. .1623
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAI65409.1"
FT                   /translation="GNNSGQPSTVVDNTIMVIIAMQYAISKAEFPAGRLRDQIRYFANG
FT                   DDLVVAVEPSLSDKISSFSASFAELGLIYDFSNKVDDRSELQFMSHTGKLIDGMYIPML
FT                   ERERICAILEWSRSDEPQFQLDAISAAMIEAWGDDELLYQIRRYYSWLLEQEPYKSIAE
FT                   LGHAPYLAEAALKALYTGKDPDAELIAIYERAMLNTPPTEDRPTKVVHEANVTAASSAA
FT                   TQTSTTSPTVTSTSGASTSTSSGTTSASLASTTPPVSATTTPSTGTTAPTTPTVRAANL
FT                   RTSQDTERQRRMREGQLNVRGENDDEDVPAASEFALPRLPTLGAKIRVPKFKGAIVLNK
FT                   DHLIKYTPDQRDLSNTRATQEQFEKWYSGVRNEVEKTDEEMALLLNGFMVWCMENGTSP
FT                   DLSGSWTMMEGEEQISYPLEPFCRHAQPTLRSIMAHFSDAATAYVVLRNQKSRYMPRYG
FT                   LKRGLNDYSLAPYAFDFYEITSTSPLRAREAHAQMKAAAIRGKASRMFGLDGNVSAQSE
FT                   NTERHTVEDVNTRVHSLSGANML"
FT   mat_peptide     <1. .636
FT                   /product="NIb polymerase"
FT   mat_peptide     637. .1620
FT                   /product="coat protein"
XX
SQ   Sequence 1785 BP; 515 A; 416 C; 451 G; 403 T; 0 other;

aj889241 Length: 1785  21-MAR-2007  Type: N  Check: 5369  ..

       1  gggaacaata gtggtcagcc atccaccgtc gtcgataaca caattatggt
      51  cataatagca atgcaatatg caatcagcaa ggccgagttt ccagctggac
     101  ggttgaggga tcaaattcga tattttgcga atggtgatga ccttgtggtt
     151  gcagtcgagc caagtttgag cgataaaatt tcatcattta gcgcgagttt
     201  tgccgagctt ggcctgattt atgatttttc aaataaagtg gacgatcgat
     251  ctgagctaca atttatgtcc catactggaa agctgattga tgggatgtac
     301  ataccaatgt tggaaaggga acgcatctgt gctatattgg aatggagtcg
     351  cagcgatgaa ccacaatttc agctggacgc aataagcgct gccatgatag
     401  aggcatgggg tgacgacgaa ctcttatacc agatcagacg atactatagt
     451  tggctcctgg agcaagaacc atacaagagc atagctgaac tggggcacgc
     501  accatacctg gctgaagccg ccttaaaggc gctatacacc ggtaaagacc
     551  cagatgcaga attgattgcc atctacgagc gggctatgct aaacacgcca
     601  ccaacggaag atcgaccaac aaaagtggtg cacgaagcta acgtcaccgc
     651  cgcatcttca gcagcaactc agacttctac gacatcaccg acagttacgt
     701  ccactagtgg cgcgtcaact tcgacatcga gcggaactac gtctgcatca
     751  ctagcaagca caactccacc agtgtctgca acaacgacac catcaacagg
     801  aaccactgcg ccaacaacac caacagtgag agccgcaaac ttgcggacct
     851  cgcaggacac agaaaggcaa aggcgaatgc gggagggcca actcaatgtg
     901  agaggtgaga atgacgatga agacgtgcca gcagcatcgg aatttgcgct
     951  accgcggcta ccaacattag gtgcgaaaat tcgggtgccc aaatttaaag
    1001  gggctatagt actcaacaaa gatcatctga ttaaatacac acctgatcag
    1051  cgtgatttgt ctaacacacg cgcgacacaa gagcaatttg agaaatggta
    1101  ctcaggtgtg aggaacgaag ttgagaagac ggatgaagaa atggcactat
    1151  tactgaatgg cttcatggtt tggtgcatgg aaaatggcac atcaccagat
    1201  ttatccgggt cttggactat gatggaaggt gaagagcaga tatcgtatcc
    1251  actcgaacca ttctgtcgtc atgcacaacc aacgttgcgg tcaataatgg
    1301  cacattttag tgatgccgca acagcatatg tagtcctacg caatcagaag
    1351  tccagataca tgccacggta tggacttaaa agaggtttga acgactattc
    1401  actggcaccg tacgctttcg acttctatga aataacttcc acatcgcctc
    1451  ttcgggctag agaggcgcat gcgcagatga aagccgcagc catcaggggc
    1501  aaggcatcta ggatgtttgg tcttgacggc aatgtatcag cccaatcgga
    1551  gaacacagag aggcatacag ttgaggatgt taacactcga gttcactcac
    1601  tctcgggtgc gaatatgctg taactgtcta cccacttact tgtttggtaa
    1651  acctgtgtta cccttgaacc tatatctgta ttgtgtggct tagccacgtg
    1701  ttactttatg gagtgccagc attcatctag ctcgggtcct gtgagtggtc
    1751  taaccacgtg ggcgcggtct gggtgcggtg caggg