Sequence of DPV Sri Lankan cassava mosaic virus
Sri Lankan cassava mosaic virus ac1 gene, ac2 gene, ac3 gene, ac4 gene, av1 gene and av2 gene, isolate Kerala 15, complete virus segment
ACC No: AJ890224
Dated: 2008-07-23 | Length: 2756 | CRC: -525027943
ID AJ890224; SV 1; circular; genomic DNA; STD; VRL; 2756 BP.
XX
AC AJ890224;
XX
DT 19-MAR-2005 (Rel. 83, Created)
DT 23-JUL-2008 (Rel. 96, Last updated, Version 6)
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DE Sri Lankan cassava mosaic virus ac1 gene, ac2 gene, ac3 gene, ac4 gene, av1
DE gene and av2 gene, isolate Kerala 15, complete virus segment
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KW ac1 gene; ac2 gene; ac3 gene; ac4 gene; AC4 protein; av1 gene; av2 gene;
KW AV2 protein; coat protein; replication enhancer;
KW replication-associated protein; transcription activator protein.
XX
OS Sri Lankan cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2756
RA Jeske H.;
RT ;
RL Submitted (09-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL Jeske H., Molecular biology and virology of plants, University of
RL Stuttgart, Pfaffenwaldring 57, Stuttgart, D 70550, GERMANY.
XX
RN [2]
RX DOI; 10.1007/s00705-005-0624-8.
RX PUBMED; 16132175.
RA Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.;
RT "Biodiversity and recombination of cassava-infecting begomoviruses from
RT southern India";
RL Arch. Virol. 151(1):55-69(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2756
FT /organism="Sri Lankan cassava mosaic virus"
FT /segment="DNA A-like"
FT /isolate="Kerala 15"
FT /mol_type="genomic DNA"
FT /country="India:Kerala, Malayinkil"
FT /isolation_source="Manihot esculenta cv. Black Cotton"
FT /virion
FT /db_xref="taxon:161378"
FT CDS 135. .491
FT /gene="av2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q5CAP0"
FT /protein_id="CAI64592.1"
FT /translation="MWDPLVNEFPDSVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL
FT ISVIRAKNYVEATSRYHHFNSRLEGSSPSELRQPIQQSCCCPHCPRHKKTSLDKQAHES
FT EAQVVQDVQKPRCS"
FT CDS 295. .1065
FT /gene="av1"
FT /product="coat protein"
FT /db_xref="GOA:Q5CAP5"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q5CAP5"
FT /protein_id="CAI64593.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT
FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMSFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVFRTLKIRIYFYDSVSN"
FT CDS complement(1062. .1466)
FT /gene="ac3"
FT /product="replication enhancer"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q709N9"
FT /protein_id="CAI64594.1"
FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFRIIQHDSRPFNRPWDI
FT ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDRLGIICINT
FT VVNAVEHVLYNVIAGTDSIEQSNLIKFNVY"
FT CDS complement(1207. .1614)
FT /gene="ac2"
FT /product="transcription activator protein"
FT /db_xref="GOA:Q5CAN7"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q5CAN7"
FT /protein_id="CAI64595.1"
FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI
FT NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHPARQPAVQQAVGHNNHPDTLQPQ
FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI"
FT CDS complement(1544. .2599)
FT /gene="ac1"
FT /product="replication-associated protein"
FT /db_xref="GOA:Q5CAP2"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q5CAP2"
FT /protein_id="CAI64596.1"
FT /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLEFFRSLSLPTNIKFIKI
FT CRELHQNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID
FT KDGDTIDWGEFQIDGRSARGGQQTANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN
FT LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPRVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKAWALKNATFISLSEPLY
FT SGSNQGPTQGS"
FT CDS complement(2143. .2445)
FT /gene="ac4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q5CAN5"
FT /protein_id="CAI64597.1"
FT /translation="MGNLTSMLCFSSKGSSQSQTIGNSIVYTQAVAPVSTPTYRALSPA
FT QTSSPTSTRMETPSTGVSFRSMEDLQEGDSRQQTTLTPQHLTQAVSQRLLESLRS"
XX
SQ Sequence 2756 BP; 692 A; 615 C; 656 G; 793 T; 0 other;
aj890224 Length: 2756 23-JUL-2008 Type: N Check: 7973 ..
1 accggatggc cgcgcccccg ctttgtggtg gacccccccc acgtggagat
51 gtcccccact cagaacgccc cctcaaagcc tgtatagttg tggtccctct
101 ttaagaactt gctcaacaag ttgtaatctg cacaatgtgg gaccctttgg
151 taaacgagtt ccctgattca gttcacggtt tccggtgtat gcttgccgtg
201 aaatatcttc agctagttga aggtacttat tcccccgata cactcggtta
251 cgatttaatc agagatttga tctctgtcat cagggccaaa aattatgtcg
301 aagcgaccag cagatatcat catttcaact cccgcctcga aggttcgtcg
351 ccgtctgaac ttcgacagcc catacagcag tcgtgctgct gtccccactg
401 tccgcgtcac aaaaagacaa gcctggacaa acaggcccat gaatcggaag
451 cccaggtggt acaggatgtt caaaagccca gatgttccta ggggatgtga
501 aggcccatgt aaggttcaat cgtttgagtc cagacacgat gtggtccata
551 taggtaaggt catgtgcatc tctgatgtca ctcgtggagt tgggcttact
601 catcgcgtgg gtaagaggtt ttgcgttaag tccgtttata tcctgggtaa
651 gatatggatg gatgaaaata ttaagaccaa gaatcatacg aatagtgtga
701 tgtccttcct tgtaagggat cgtaggcctg ttgataagcc ccaggatttt
751 ggtgaagtgt ttaatatgtt cgataatgaa cctagtacag ctacggtgaa
801 gaacatgcat cgtgatcgtt atcaagtcct caggaagtgg agtgccactg
851 tcactggtgg tcagtatgcg agcaaggaac aggctttagt taggcgtttt
901 tttagagtta ataattatgt tgtgtataac cagcaagagg ctggcaagta
951 tgaaaatcat accgagaatg cattgatgct gtacatggcg tgtactcatg
1001 cctctaaccc tgtattccgt acgctgaaga ttagaatcta cttctacgat
1051 tcggtcagca attaataaac attaaatttt attaaattag actgctcaat
1101 actgtcagtc ccagcgatta cattatataa tacatgttct actgcgttta
1151 caaccgtatt aatacatata atccctaatc tatcgaggta ttttaatact
1201 tgggtcttaa ataccctcaa gaaacgccag gtctgaggct gtaaggtcgt
1251 ccagaccttg aaatccatcc agcattgatg tagtcccaac gctttcctca
1301 ggttgtggtt gaagcgtatc tggatggtta ttatgtccca cggcctgttg
1351 aacggccggc tgtcgtgctg gatgatcctg aaatagaggg gatttggaac
1401 ctcccagata tagacgccat tcatcgcctg agctgcagtg atgagttccc
1451 ctgtgcgtga atccatggtt gtggcagttg atgtgcacgt agtatgagca
1501 gccgcaattg aggtctaccc tccgtcgccg aatggcctta cgcttagctg
1551 ccctgtgttg gaccttgatt ggaacctgag tagagcggct cgctgaggga
1601 gatgaaggtc gcattcttca gagcccaagc cttcaatgcg ctattcttcg
1651 cctcgtcaag gaattcttta tagctggaat tgggcccagg attgcagagg
1701 aagatagtgg gaattccccc tttaatttga actggcttcc cgtacttggt
1751 gtttgactgc cagtctcttt gggcccccat gaattcctta aagtgcttta
1801 gatagtgcgg atctacgtca tcaattacgt tgtaccatgc atcattgttg
1851 taaaccctag gactcaagtc cagatgtcca cacagataat tgtgtggacc
1901 taatgaccta gcccacattg ttttgcctgt acgactatcg ccctcgatga
1951 ctatactatt aggtctcaaa ggcctcgcag aggcacccat gacgttctcg
2001 gacacccact cctcaagttc atctggaact tggtcaaatg aagaggctga
2051 gaagggagac acatatacct cgggaggagg tgtaaaaatc ctatctaaat
2101 tagcatttag attatgaaat tgtaaaacat aatccttggg tgctaactcc
2151 ttaatgactc taagagcctc tggcttactg cctgtgttaa gtgctgcggc
2201 gtaagcgtcg tttgctgtct gctgtccccc tcttgcagat cttccatcga
2251 tctgaaactc accccagtcg atggtgtctc catccttgtc gatgtaggac
2301 ttgacgtctg agctggactt agcgctctgt atgttggggt ggaaactggt
2351 gctactgctt gggtgtacac aatcgaattg ccgattgttt gtgattgtga
2401 gcttcccttc gaactgaagc agagcatgga ggtgaggttc cccattctga
2451 tggagttctc tgcaaatttt aataaatttg atgtttgtcg gaagactcaa
2501 gcttcggaag aactcgagta agtgttcttt ggtgagagaa cacttagggt
2551 atgtgaggaa tatatttttg gactgaattc tgaatcgtgg gtttctcatc
2601 tttgactcgg tcaattggag acacccctga gcaagtctct agtgaattgg
2651 agacaatata tatgtgtctc caaatggcat tcttgtaatt ctcaaaagtt
2701 acactcagat ttcaaagtcg aatttgaaat ccaaaagcgg ccatccgtat
2751 aatatt