Sequence of DPV Sweet potato virus 2

Sweet potato virus Y partial gene for polyprotein, genomic RNA, isolate Pink1

ACC No: AM050887

Dated: 2006-07-17 | Length: 1857 | CRC: -622291532

                
ID   AM050887; SV 1; linear; genomic RNA; STD; VRL; 1857 BP.
XX
AC   AM050887;
XX
DT   17-JUL-2006 (Rel. 88, Created)
DT   17-JUL-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Sweet potato virus Y partial gene for polyprotein, genomic RNA, isolate
DE   Pink1
XX
KW   coat protein; nuclear inclusion body protein; polyprotein.
XX
OS   Sweet potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1857
RA   Tairo F.D.;
RT   ;
RL   Submitted (19-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Tairo F.D., Plant Biology and Forestry Genetics, Swedish University of
RL   Agric Sciences, P.O. Box 7080 SE-750 07, Uppsala, SWEDEN.
XX
RN   [2]
RA   Tairo F.D., Jones R.A.C., Valkonen J.P.T.;
RT   "Molecular resolution of potyvirus complexes and phylogenetic analysis of
RT   sweet potato virus Y infecting Sweetpotatoes in Western Australia";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1857
FT                   /organism="Sweet potato virus Y"
FT                   /isolate="Pink1"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia:Perth"
FT                   /isolation_source="Ipomoea batatas"
FT                   /virion
FT                   /db_xref="taxon:225962"
FT   CDS             <1. .1644
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAJ19384.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAMTYSLCKLNIKPENHDQVCIYFANG
FT                   DDLLLAIDPTYEWILDSLEKLFRELGLNYDFSSRTNDKEELWFMSHRGMKRDGIYIPKL
FT                   EPERIVSILEWDRASEPVHRLEAICAAMVEAWGYDDLLHHIRKFYAWILDQAPYSELAR
FT                   VGKAPYIAETALKALYTCVEPSAEDLSEYVRVLNLMYDDAVESNDCEPVYHQSGTEETK
FT                   DAGTPTPAKSVKTRTGQTRPLKAPEGSTSPTDPPPPTVEEIIEEETPAQKALREARGKQ
FT                   PATQPSYTYGRDTGPRSPRQVTTTSRVRDRDVNAGTVGTFIVPRLQITSSKKRLPIVDG
FT                   RPVINLDHLAVYDPEQTNLANTRSTQEQFKAWYEGVKGDYGVSDAEMSILLNGLMVWCI
FT                   ENGTSPNINGMWVMMDGEEQVTYPIKPLLDHAVPTFRRIMTHFSDIAEAYIEKRNRIKA
FT                   YMPRYGLQRNLTDMSLARYAFDFYELHSNTPVRAREAHMQMKAAALKNAQNRLFGLDGN
FT                   VSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT   mat_peptide     <1. .645
FT                   /product="nuclear inclusion body protein"
FT   mat_peptide     646. .1641
FT                   /product="coat protein"
FT   3'UTR           1588. .1810
XX
SQ   Sequence 1857 BP; 619 A; 349 C; 423 G; 466 T; 0 other;

am050887 Length: 1857  17-JUL-2006  Type: N  Check: 6944  ..

       1  ggcaataaca gcgggcaacc ttctacagtg gtggacaaca cacttatggt
      51  tgttttggct atgacttatt cattgtgtaa acttaatatt aaaccagaaa
     101  accatgatca agtgtgtatt tattttgcaa atggtgatga cctattatta
     151  gccatagatc ccacatatga atggattctt gattcactcg aaaaattgtt
     201  cagggagctt ggacttaatt acgatttttc atcaagaaca aatgacaagg
     251  aggagctgtg gttcatgtct cacagaggaa tgaaaagaga tggtatttac
     301  ataccaaaac tagaacctga gagaattgtg tcaatactag agtgggatag
     351  agcaagtgaa ccagtgcata gattggaagc tatttgtgct gcgatggtcg
     401  aagcatgggg atatgatgat ttgttacacc atatccgcaa attctatgca
     451  tggatccttg atcaggcacc atatagcgaa cttgctcgag taggcaaagc
     501  tccatatata gcagagacag cactgaaagc tctgtacaca tgtgttgaac
     551  catcagctga agatttgtcc gagtatgttc gtgttttgaa cttgatgtat
     601  gatgatgctg ttgaatcgaa tgattgtgag ccagtctacc atcagtcagg
     651  cactgaagaa acaaaagacg ctggaacccc aacaccagca aaatcagtta
     701  agacaagaac aggacaaact cgaccgctta aagcaccaga agggagcacg
     751  agtccaacag atccaccacc tccaacagtt gaagagataa ttgaagaaga
     801  aacaccagca caaaaagcat tgagggaagc ccgtggcaag caaccagcaa
     851  cacaaccctc atacacttat gggcgagaca caggaccgcg tagcccaagg
     901  caagttacaa caacaagcag agttagggat agagatgtta atgctggaac
     951  agtagggacg tttatagttc caagacttca aattacatca agcaagaaga
    1001  gattgccaat agttgacgga cgtccagtaa tcaacctgga tcacttggca
    1051  gtttacgatc cagagcaaac aaatcttgca aataccagat caacacaaga
    1101  acaatttaag gcatggtatg aaggtgtgaa gggtgattat ggggtatctg
    1151  atgctgaaat gagcatactc cttaatggcc tcatggtttg gtgtattgag
    1201  aatggtacat caccgaatat taatggaatg tgggtgatga tggacggaga
    1251  agaacaagta acttatccaa taaaacctct attggatcat gctgtcccca
    1301  catttagacg gataatgaca cacttcagcg acatagctga agcgtacatt
    1351  gaaaagagaa acaggataaa ggcctatatg ccaagatatg gcctacagag
    1401  gaatttgact gatatgagtc ttgcgcggta tgcattcgat ttctatgaac
    1451  tccactcaaa cacaccagta agagcaaggg aggcacatat gcaaatgaaa
    1501  gcagcagctt taaagaatgc acagaatcgc ctgtttggtt tggatggaaa
    1551  cgtctccacg caagaagaag acacggagag gcatacaacg actgatgtta
    1601  caagaaatat acataacctg ttaggaatga gaggtgtgca gtaaacaata
    1651  tattgctcgt acttttaatt tcagttggtc tttaatttaa attcgtgtct
    1701  ttcagtcccg aagagtgttg gttatatgta gtaactatgt gtggttgtac
    1751  caccgttgct acatataaga aaacctcttt ctattacgta tcataaggga
    1801  ctcttaaaag tgagtctttg actcgtaaga aaagcctttt tggttcgtga
    1851  tcgagcc