Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus partial gene for polyprotein, genomic DNA, isolate Aus142-ARC

ACC No: AM050890

Dated: 2006-07-17 | Length: 1356 | CRC: -708057625

                
ID   AM050890; SV 1; linear; genomic RNA; STD; VRL; 1356 BP.
XX
AC   AM050890;
XX
DT   17-JUL-2006 (Rel. 88, Created)
DT   17-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Sweet potato feathery mottle virus partial gene for polyprotein, genomic
DE   DNA, isolate Aus142-ARC
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KW   coat protein; polyprotein.
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OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1356
RA   Tairo F.D.;
RT   ;
RL   Submitted (19-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Tairo F.D., Plant Biology and Forestry Genetics, Swedish University of
RL   Agric Sciences, P.O. Box 7080 SE-750 07, Uppsala, SWEDEN.
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RN   [2]
RA   Tairo F.D., Jones R.A.C., Valkonen J.P.T.;
RT   "Molecular resolution of potyvirus complexes and phylogenetic analysis of
RT   sweet potato virus Y infecting Sweetpotatoes in Western Australia";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1356
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /isolate="Aus142-ARC"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia:East Kimberley"
FT                   /isolation_source="Ipomoea batatas"
FT                   /virion
FT                   /db_xref="taxon:12844"
FT   CDS             <1. .1135
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /protein_id="CAJ19387.1"
FT                   /translation="DQAPYNELARSGKAPYIAETALKALYTGVQPSASELSAYAKVLNE
FT                   MYDDSVLQENESEVYHQSNERTEFKDAGANPPAPKPKDIPPPPTITEVTDPEDPKQAAL
FT                   RAARAKQPAIIPESYGRDTSKEKESIVGASSKGVKDKDVNVGTVGTFVVPRVKMNANKK
FT                   RQPMVNGRAIINFQHLSTYEPEQVEVAXTRSTQEQFQAWYEGVKGDYGVDDTGMGILLN
FT                   GLMVWCIENGTSPNMNGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIE
FT                   MRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQMKAAALKNAKNR
FT                   LFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT   mat_peptide     187. .1130
FT                   /product="coat protein"
FT   3'UTR           1132. .1356
XX
SQ   Sequence 1356 BP; 432 A; 259 C; 329 G; 335 T; 1 other;

am050890 Length: 1356  17-JUL-2006  Type: N  Check: 6161  ..

       1  tgaccaagcc ccatacaatg aattagcacg aagtgggaag gcaccataca
      51  tagctgaaac tgcacttaaa gcactctata ctggagtcca acctagtgct
     101  tctgaattaa gtgcgtatgc aaaagtgctt aacgaaatgt atgatgatag
     151  tgtacttcag gagaatgagt cagaagtata ccatcaatct aatgagcgta
     201  ctgagttcaa agatgcagga gcgaaccctc cagctcctaa acctaaggat
     251  atccctccac caccaacaat aactgaggtt actgatccag aagatccaaa
     301  gcaggcagct ttgagagctg cacgagctaa gcaacccgca atcattccag
     351  aatcatatgg acgagacact agcaaggaga aggaatcaat agtgggggca
     401  tcatcaaagg gtgtgaagga caaagatgta aacgttggta cagttggcac
     451  gtttgtcgtg ccacgtgtta agatgaatgc aaacaagaaa aggcaaccaa
     501  tggtaaatgg aagggccatt ataaatttcc aacacttgtc aacatatgag
     551  ccagaacagg ttgaggttgc amacacccgg tcgactcaag aacagtttca
     601  agcatggtat gaaggagtga aaggggacta tggtgttgac gatacaggaa
     651  tggggatctt attgaatgga ttaatggttt ggtgcattga aaatggcaca
     701  tccccaaata tgaatggtgt gtggacaatg atggatggtg atgagcaagt
     751  gacatatcca attaaaccat tgttggacca tgcagtgcct acttttaggc
     801  agataatgac gcacttcagt gacgttgctg aagcttacat agagatgcga
     851  aaccgtacaa aggcgtacat gccaaggtat ggtctacaac gtaatttgac
     901  tgatatgagt cttgcgcgat atgcatttga tttctacgag ctgcattcaa
     951  ccacccctgc acgtgcaaaa gaagcacatt tacagatgaa ggcagccgca
    1001  cttaagaatg cgaaaaatcg gttgtttggt ttggacggaa acgtctccac
    1051  gcaagaagaa gatacggaga ggcacacgac aactgatgtg actagaaata
    1101  tacataacct cttaggaatg aggggtgtgc aataggacat cctctgcact
    1151  gtagtttata cttatgttat ctttagtatg cctttaattt aaattcgtgt
    1201  ctttcagtcc cgaaggagat ggttgagtgc ataacatggt gggattatat
    1251  ctcggttatt gcatttgaga agtcgccttt ctattacgta tcataaggga
    1301  ctcttaaaag tgaggagtac ctcgtaagaa aagccttttt ggttcgtgat
    1351  cgagcc