Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus partial gene for polyprotein, genomic RNA, isolate Pink-2C

ACC No: AM050893

Dated: 2006-07-17 | Length: 1810 | CRC: 737600921

                
ID   AM050893; SV 1; linear; genomic RNA; STD; VRL; 1810 BP.
XX
AC   AM050893;
XX
DT   17-JUL-2006 (Rel. 88, Created)
DT   17-JUL-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Sweet potato feathery mottle virus partial gene for polyprotein, genomic
DE   RNA, isolate Pink-2C
XX
KW   coat protein; nuclear inclusion body protein; polyprotein.
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1810
RA   Tairo F.D.;
RT   ;
RL   Submitted (19-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Tairo F.D., Plant Biology and Forestry Genetics, Swedish University of
RL   Agric Sciences, P.O. Box 7080 SE-750 07, Uppsala, SWEDEN.
XX
RN   [2]
RA   Tairo F.D., Jones R.A.C., Valkonen J.P.T.;
RT   "Molecular resolution of potyvirus complexes and phylogenetic analysis of
RT   sweet potato virus Y infecting Sweetpotatoes in Western Australia";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1810
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /isolate="Pink-2C"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia:East Kimberley"
FT                   /isolation_source="Ipomoea batatas"
FT                   /virion
FT                   /db_xref="taxon:12844"
FT   CDS             <1. .1587
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAJ19390.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAVYYTLLKLGVLELEISERCVFFANG
FT                   DDLLIAMRPDTAHLLDNFGECFAELGLNYDFSSRTTKKEELWFMSHCGVKRDGIYIPKL
FT                   EPERIVSILEWDRSHEPIHRLEAICAAMVEAWGYDELLHQIRKFYAWVLGQAPYSELAR
FT                   TGKAPYIAETALRSLYTGVQPSADDLIEYTRVLNEMYDDSLLQDSELTVYHQSGNPPEF
FT                   KDAGANPPAPKPKGAFTAPEITEITEPEDSRQAALREAKQKQPAVTPESYGRDTGEKPM
FT                   RSISPQRVKDKDVNVGTTGTFLVPRVKLHTSKMRQPRVNGISVVNLQHLTTYEPEQHNI
FT                   GNTRSTQEQFQAWYEGVKGDYGVNDAGMSILLNGLMVWCIENGTSPNINGVWTMMDGDE
FT                   QVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARY
FT                   AFDFYELHSTTPTRAKEAHMQMKAAALKNAHNRLFGLDGNVSTQEEDTERHTATDVTRN
FT                   IHNLLGMRGVH"
FT   mat_peptide     <1. .645
FT                   /product="nuclear inclusion body protein"
FT   mat_peptide     646. .1584
FT                   /product="coat protein"
FT   3'UTR           1588. .1810
XX
SQ   Sequence 1810 BP; 549 A; 361 C; 430 G; 470 T; 0 other;

am050893 Length: 1810  17-JUL-2006  Type: N  Check: 436  ..

       1  gggaataata gtgggcaacc atcaaccgtc gtggacaata cattgatggt
      51  tgtgctagcc gtctactaca ctttgttgaa attgggtgtt ttggagctcg
     101  agatcagtga acggtgtgta ttcttcgcaa acggggatga tttactgata
     151  gctatgagac cagatacagc tcatcttttg gataacttcg gtgagtgctt
     201  tgctgagctt gggcttaact atgacttctc atcaagaaca actaagaagg
     251  aagaattatg gttcatgtct cactgtggag tcaaacgaga tggaatatac
     301  attccaaaac tcgaacctga acgaatagta tctattcttg aatgggatag
     351  atcacatgag cctatacaca ggctcgaagc aatttgtgct gcaatggtgg
     401  aagcgtgggg ttatgacgaa cttctccacc aaattagaaa attctatgca
     451  tgggtcttgg gacaagcacc atacagtgaa ctagcacgaa ctggaaaggc
     501  cccatatatt gctgaaactg cacttagatc actgtacact ggagtgcaac
     551  ctagcgctga cgatctcatc gagtacacac gtgttcttaa cgagatgtat
     601  gatgatagcc ttcttcaaga cagtgagtta acggtgtatc atcaatctgg
     651  taacccccct gaatttaaag atgcaggtgc gaacccacca gcaccaaagc
     701  caaaaggggc atttacagca ccagaaatca cagaaattac tgagccggag
     751  gattccagac aagctgcgct tcgcgaagct aaacagaaac aacctgctgt
     801  cacacccgaa tcatacggta gggacacagg tgagaaacct atgcgttcta
     851  tttcaccaca aagggtgaaa gacaaagacg tcaacgttgg cacgacaggc
     901  acatttttgg tgccacgagt taagctccat actagcaaaa tgcgccaacc
     951  tagagtcaat ggaatctctg tagtaaactt acaacacctc acaacttatg
    1001  aacctgagca gcataacatt gggaatacac gctcaactca ggaacagttt
    1051  caagcatggt atgaaggtgt taagggtgat tatggtgtta atgacgctgg
    1101  aatgtcaatc ttgttgaatg gattgatggt atggtgcata gagaatggaa
    1151  catccccaaa tataaatggc gtttggacga tgatggatgg ggatgaacaa
    1201  gtgacgtacc ccataaagcc attactggat catgcagtgc ctacttttag
    1251  gcaaatcatg acacacttca gtgacgttgc tgaagcgtat atagaaatga
    1301  ggaatcgcac taaggcatat atgcctaggt atggattaca acgtaacttg
    1351  actgatatga gtcttgcgcg atatgcattt gatttctatg agctgcactc
    1401  aacaacacct acacgtgcta aagaagcaca catgcagatg aaagcagctg
    1451  cacttaagaa tgcgcataat cggttgtttg gtttagatgg aaacgtctca
    1501  acgcaagaag aggatacgga gaggcacact gcgactgatg ttactagaaa
    1551  tatacataac ctcttaggaa tgaggggtgt gcactaggtg gaactttgca
    1601  ctgtatttat ttacttatgt ggtttttagt atgcctttat tttaaattcg
    1651  tgtccttcag tcccgacaga gatggttggg tgtattgaca gagtgggctt
    1701  ttagcctggt ccatacactc gagaaatttc tggtctatta cgtatcataa
    1751  gggactctta aaagtgagga gtacctcgta agaaaagcct ttttggttcg
    1801  tgatcgagcc