Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus partial RNA for polyprotein, genomic RNA

ACC No: AM076411

Dated: 2006-11-17 | Length: 1575 | CRC: -610739081

                
ID   AM076411; SV 1; linear; genomic RNA; STD; VRL; 1575 BP.
XX
AC   AM076411;
XX
DT   07-JAN-2006 (Rel. 86, Created)
DT   17-NOV-2006 (Rel. 89, Last updated, Version 2)
XX
DE   Sweet potato feathery mottle virus partial RNA for polyprotein, genomic RNA
XX
KW   coat protein; nuclear inclusion body protein; polyprotein.
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1575
RA   Parrella G.;
RT   ;
RL   Submitted (18-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Parrella G., Istituto per la Protezione delle Piante, CNR- National
RL   Research Council, Via Universita 133 - Portici (NA), 80055, ITALY.
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RN   [2]
RA   Parrella G., De Stradis A., Giorgini M.;
RT   "Sweet potato feathery mottle virus is the casual agent of sweetpotato
RT   virus disease in Italy";
RL   Plant Pathol. 55(6):818-818(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1575
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /isolate="Ita1"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy:Latium"
FT                   /isolation_source="Ipomoea batatas L."
FT                   /db_xref="taxon:12844"
FT   CDS             <1. .1575
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q2PAY1"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q2PAY1"
FT                   /protein_id="CAJ28079.1"
FT                   /translation="GQPSTVVDNTLMVVLAVYYTLLKLGVSELEISERCVFFANGDDLL
FT                   IAMRPDTAHLLDNFSKCFAELGLNYDFSSRTTKREELWFMSHCGIKRDGIYIPKLEPER
FT                   IVSILEWDRSHEPIHRLEAICAAMVEAWGYDELLHQIRKFYAWVLGQAPYSELARTGKA
FT                   PYIAETALKSLYTGVQPSADDLSEYTRVLNEMYDDSLLQDNDLTVYHQSGNPPEFKDAG
FT                   ANPPAPKPKGPYVAPEITEVTDPEDPKQAALREARQKQPAVTPESYGRDTGEKPMRSVS
FT                   PQRVKDKDVNVGTTGTFLVPRVKLHTSKMRQPRVNGVSVVNLQHLATYEPEQHNIGNTR
FT                   STQEQFQAWYEGVKSDYGVDDAGMAILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTY
FT                   PIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDF
FT                   YELHSTTPTRAKEAHMQMKAAALKNAHNRLFGLDGNVSTQEEDTERHTATDVTRNIHNL
FT                   LGMRGVQ"
FT   mat_peptide     <1. .633
FT                   /product="nuclear inclusion body protein"
FT   mat_peptide     634. .1572
FT                   /product="coat protein"
XX
SQ   Sequence 1575 BP; 489 A; 320 C; 375 G; 391 T; 0 other;

am076411 Length: 1575  17-NOV-2006  Type: N  Check: 6488  ..

       1  gggcaaccct caaccgttgt ggacaataca ctgatggttg tgttggccgt
      51  atactacact ttgttgaaat tgggtgtctc agagctcgag atcagtgaac
     101  ggtgcgtatt ctttgcaaat ggggatgact tactgatagc tatgagacca
     151  gatacagctc atcttttgga taacttcagt aagtgctttg ctgagctcgg
     201  acttaactat gacttctcat caaggacaac taagagagag gaattgtggt
     251  tcatgtctca ttgtggaatc aaacgggatg ggatatacat tcccaagctc
     301  gagcctgaac gaatagtgtc tattcttgaa tgggatagat cacatgagcc
     351  tatacacaga cttgaagcaa tttgtgctgc aatggtggaa gcgtggggtt
     401  atgacgaact tctccatcaa attagaaaat tttatgcatg ggtcttagga
     451  caagcaccat acagtgaact agcacgaact ggaaaggccc catatattgc
     501  tgaaactgca cttaaatcac tgtatactgg agtacaacct agcgctgacg
     551  atctcagcga gtacacacgt gtccttaacg agatgtatga tgatagcctc
     601  cttcaagaca atgatttaac ggtgtatcat caatctggta accctcctga
     651  atttaaagat gcaggtgcga acccaccagc accaaagcca aaagggccat
     701  atgtagcacc agaaatcaca gaagttactg atcccgagga tcccaaacaa
     751  gctgcgcttc gcgaagctag acagaaacaa cctgctgtca cacccgaatc
     801  atacggtaga gatacaggcg agaaacctat gcgctctgtt tcaccacaaa
     851  gggtgaaaga caaggatgtc aatgttggta cgacaggtac atttttagta
     901  ccacgagtta agcttcatac tagtaaaatg cgccaaccga gagtcaatgg
     951  agtctccgta gtaaacttac aacaccttgc aacctatgaa cctgagcaac
    1001  ataacattgg gaatacacgc tcaactcagg aacagtttca agcatggtat
    1051  gaaggtgtca agagtgatta tggtgttgat gacgctggaa tggcaatctt
    1101  gttgaatgga ttgatggtat ggtgcataga gaatggaaca tctccaaata
    1151  taaatggcgt ttggacgatg atggatgggg atgaacaagt gacgtacccc
    1201  ataaagccat tactggatca tgcagtgcct acttttaggc aaatcatgac
    1251  acacttcagt gacgttgctg aagcgtatat agaaatgagg aatcgcacca
    1301  aggcatatat gcctaggtat ggattacaac gtaatttgac tgatatgagt
    1351  cttgcgcgat atgcatttga tttctatgag ctgcactcaa caacacctac
    1401  acgtgctaaa gaagcacaca tgcagatgaa agcagctgca cttaagaatg
    1451  cgcataatcg gttgtttggt ttggatggaa acgtctccac gcaagaagag
    1501  gatacggaga ggcacactgc gactgatgtt actagaaata tacataacct
    1551  cttgggaatg aggggtgtgc aatag