Sequence of DPV Lily symptomless virus

Lily symptomless virus CP gene for coat protein, genomic RNA, isolate Palampur

ACC No: AM087400

Dated: 2005-09-28 | Length: 876 | CRC: -142402992

                !!NA_SEQUENCE 1.0
ID   AM087400   standard; genomic RNA; VRL; 876 BP.
XX
AC   AM087400;
XX
SV   AM087400.1
XX
DT   28-SEP-2005 (Rel. 85, Created)
DT   28-SEP-2005 (Rel. 85, Last updated, Version 1)
XX
DE   Lily symptomless virus CP gene for coat protein, genomic RNA, isolate
DE   Palampur
XX
KW   coat protein; CP gene.
XX
OS   Lily symptomless virus (LSV)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-876
RA   Nagar R.;
RT   ;
RL   Submitted (24-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL   Nagar R., Floriculture Division, Institute of Himalayan Bioresource Tech.,
RL   P. O. Box No. 6, Palampur, Distt Kangra, Himachal Pradesh 176 061, INDIA.
XX
RN   [2]
RA   Nagar R., Singh A.K., Hallan V., Zaidi A.A.;
RT   "Variability assessment of coat protein gene among different isolates of
RT   Lily symptomless virus in India";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .876
FT                   /country="India:Northern Himalayan Region"
FT                   /db_xref="taxon:12173"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Lily symptomless virus"
FT                   /isolate="Palampur"
FT                   /specific_host="Lilium sp."
FT   CDS             1. .876
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ32320.1"
FT                   /translation="MQSRPDQESGSASETPARGRPTPSDAPRDEHTNYNNNAESLLEQR
FT                   LTRLIEKLNAEKHNSNLRNVAFEIGRPSLEPTSAMRRNPANPYGRFSIDELFKMKVGVV
FT                   SNNMATTEQMAKIASDIAGLGVPTEHVASVILQMVIMCACVSSSAFLDPEGSIEFENGA
FT                   VPVDSIAAIMKKHAGLRKVCRLYAPIVWNSMLVRNQPPADWQAMGFQYNTRFAALDTFD
FT                   YVTNQAAIQPVEGIIRRPTSAEVIAHNAHKQLALDRSNRNERLGSLETEYTGGVQGAEI
FT                   VRNHRYANNG"
XX
SQ   Sequence 876 BP; 243 A; 238 C; 228 G; 167 T; 0 other;

 AM087400  Length: 876  October 4, 2005 08:49  Type: N  Check: 4705  ..

       1  atgcaatcaa gaccagacca agaatccggc tcagcaagcg agactcctgc
      51  acgtggcagg cccacaccca gtgatgcacc aagagacgag cacaccaatt
     101  acaacaataa cgccgagtca ctcttagagc aacgactaac ccggctgatc
     151  gagaagctca atgctgaaaa gcacaattcc aatctgcgaa atgtggcttt
     201  cgagatcggg aggccctctc tggaacccac gagtgccatg cgaaggaacc
     251  ctgcgaaccc ctacgggaga ttctcaattg acgaactctt caagatgaag
     301  gttggcgtcg tatctaacaa catggcaacc actgaacaaa tggccaagat
     351  agcgtcagac atcgcagggc ttggggtacc aacggagcac gtcgcatcag
     401  taatattgca aatggtcatc atgtgtgctt gcgtgagcag ttcggcgttc
     451  cttgaccctg agggcagcat tgagtttgag aatggagcgg tgcccgtcga
     501  ctccatcgct gcgatcatga agaagcacgc tggactgcgg aaagtctgcc
     551  ggctctatgc ccctatcgtg tggaacagca tgcttgtgcg aaatcaacca
     601  ccagctgatt ggcaagctat gggtttccaa tacaacacgc ggttcgcagc
     651  tcttgacacc ttcgactacg tgactaacca ggcggctatc caacctgtcg
     701  aggggatcat caggcgaccc acttctgctg aggtcattgc ccacaacgcg
     751  cacaagcaat tagccctgga taggtcaaac cgcaatgagc gtctggggag
     801  cctggaaacc gaatacaccg gtggggtaca aggagctgaa atcgtccgaa
     851  atcatcgata cgcaaataat ggatga