Sequence of DPV Lily symptomless virus

Lily symptomless virus CP gene for coat protein, genomic RNA, isolate Tulip

ACC No: AM087402

Dated: 2005-09-28 | Length: 876 | CRC: -145509228

                !!NA_SEQUENCE 1.0
ID   AM087402   standard; genomic RNA; VRL; 876 BP.
XX
AC   AM087402;
XX
SV   AM087402.1
XX
DT   28-SEP-2005 (Rel. 85, Created)
DT   28-SEP-2005 (Rel. 85, Last updated, Version 1)
XX
DE   Lily symptomless virus CP gene for coat protein, genomic RNA, isolate Tulip
XX
KW   coat protein; CP gene.
XX
OS   Lily symptomless virus (LSV)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-876
RA   Nagar R.;
RT   ;
RL   Submitted (24-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL   Nagar R., Floriculture Division, Institute of Himalayan Bioresource Tech.,
RL   P. O. Box No. 6, Palampur, Distt Kangra, Himachal Pradesh 176 061, INDIA.
XX
RN   [2]
RA   Nagar R., Singh A.K., Hallan V., Zaidi A.A.;
RT   "Variability assessment of coat protein gene among different isolates of
RT   Lily symptomless virus in India";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .876
FT                   /country="India:Srinagar, Kashmir valley"
FT                   /db_xref="taxon:12173"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Lily symptomless virus"
FT                   /isolate="Srinagar"
FT                   /specific_host="Tulipa sp."
FT   CDS             1. .876
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ32322.1"
FT                   /translation="MQSRPDQVSASASETPARGRPTPSDAPRDEPTNYNNNAESLLEQR
FT                   LTRLIEKLNAEKHNSNLRNVAFEIGRPSPEPTSAMRRNPANPYGRFSIDELFKMKVGVV
FT                   SNNMATTEQMAKIASDIAGLGVPTEHVASVILQMVIMCACVSSSAFLDPEGSIEFENGA
FT                   VPVDSIAAIMKKHAGLRKVCRLYAPIVWNSMLVRNQPPADWQAMGFXYNTRFAAFDTFD
FT                   YVTNQAAIQPVEGIIRRPLLLRHCPTRTHKQLALDRSNHNERLGSLETEYTGGVQGAEI
FT                   VRNHRYANNG"
XX
SQ   Sequence 876 BP; 241 A; 237 C; 227 G; 170 T; 1 other;

 AM087402  Length: 876  October 4, 2005 08:49  Type: N  Check: 3612  ..

       1  atgcaatcaa gaccagacca agtatccgcc tctgcaagcg agacccctgc
      51  acgtggcagg cccacaccca gtgatgcacc aagagacgag cccaccaatt
     101  acaataacaa cgctgagtca ctgttagagc aacgactaac ccggctgatt
     151  gagaagctca atgctgaaaa gcacaattcc aatctgcgaa atgtggcttt
     201  cgagatcggg aggccctcgc cggaacccac gagtgccatg cgaaggaatc
     251  ctgcgaaccc ctacgggaga ttctcaattg acgaactctt caagatgaag
     301  gttggcgtcg tatctaacaa catggcaacc actgaacaaa tggccaagat
     351  agcgtcagac atcgcagggc ttggagtacc aacggagcac gtcgcatcag
     401  taatattgca aatggtcatc atgtgtgctt gcgtgagcag ttcggcgttc
     451  cttgaccctg agggcagcat tgagtttgag aatggagcgg tgcccgtcga
     501  ctccatcgct gcgatcatga agaagcacgc tggactgcgg aaagtctgcc
     551  ggctctatgc ccctatcgtg tggaacagca tgcttgtgcg aaatcaacca
     601  ccagctgatt ggcaagctat gggcttccna tacaatacgc ggttcgcagc
     651  ttttgacacc ttcgactacg tgactaacca ggcggctatc caacctgtcg
     701  aggggatcat caggcgaccc cttctgctga ggcattgccc aacgcgcaca
     751  cacaagcaat tagccctgga taggtcaaac cacaatgagc gtctggggag
     801  tctggaaacc gaatacaccg gtggggtaca aggagctgaa atcgtccgaa
     851  atcatcgata cgcaaataat ggatga