Sequence of DPV Pepino mosaic virus

Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and CP gene for coat protein, genomic RNA, clone Am 01.2, isolate 2

ACC No: AM113804

Dated: 2005-12-13 | Length: 787 | CRC: -310725425

                
ID   AM113804   standard; genomic RNA; VRL; 787 BP.
XX
AC   AM113804;
XX
SV   AM113804.1
XX
DT   13-DEC-2005 (Rel. 86, Created)
DT   13-DEC-2005 (Rel. 86, Last updated, Version 1)
XX
DE   Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and
DE   CP gene for coat protein, genomic RNA, clone Am 01.2, isolate 2
XX
KW   coat protein; CP gene; TGBp3 gene; triple gene block protein 3.
XX
OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-787
RA   Pagan I.;
RT   ;
RL   Submitted (13-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Pagan I., Biotecnologia, E.T.S. Ingenieros Agronomos, Ciudad Universitaria,
RL   Madrid, 28040, SPAIN.
XX
RN   [2]
RA   Pagan I., Cordoba-Selles M., Martinez-Priego L., Fraile A., Malpica J.M.,
RA   Jorda C., Garcia-Arenal F.;
RT   "Genetic structure of the population of Pepino mosaic virus infecting
RT   tomato crops in Spain";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .787
FT                   /country="Spain:Almeria"
FT                   /db_xref="taxon:112229"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Pepino mosaic virus"
FT                   /clone="Am 01.2"
FT                   /isolate="2"
FT                   /isolation_source="Tomato"
FT   CDS             <1. .35
FT                   /codon_start=3
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /protein_id="CAJ34714.1"
FT                   /translation="NGLSFPKFEN"
FT   CDS             74. .787
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ34715.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSAAKYGALAMQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 787 BP; 223 A; 215 C; 159 G; 190 T; 0 other;

am113804 Length: 787  13-DEC-2005  Type: N  Check: 1484  ..

       1  ggaacgggtt aagttttcct aaatttgaaa attaatattg agtgttcaca
      51  aaaatcaact tcaataaaca atcatgcctg acacaacacc tgttgctgcc
     101  acttcaagtg caccacccac agccaaagat gctggtgcca aagctccttc
     151  tgacttctca aatcccaata cagctcctag tctcagtgat ttgaagaaag
     201  tcaagtatgt ctccaccgtg acctccgtgg ccacaccagc tgaaattgaa
     251  gccctaggca aaatcttcac cgctatgggc cttgccgcca atgagactgg
     301  tccggccatg tgggatctag ctcgtgcata tgctgatgtg cagagttcta
     351  aatcggcaca gctgattgga gctacccctt ccaaccctgc actatcacgc
     401  cgagcccttg ctgctcagtt tgatcgaatc aatataaccc ccaggcaatt
     451  ttgcatgtac tttgccaaag ttgtttggaa catacttctc gacagcaaca
     501  ttccaccagc aaattgggcc aaacttggtt accaagaaga tacaaaattt
     551  gctgcatttg acttcttcga tggagtcacc aaccctgcca gcctgcagcc
     601  tgctgatggt cttatcaggc agccaaatga gaaagaacta gctgctcact
     651  ccgcagctaa gtacggcgcc ttggctatgc aaaagatctc cacaggtaat
     701  tatattacca cacttggaga agtcacacgt ggacacatgg gaggagctaa
     751  caccatgtac gcgatagacg caccccctga actttaa