Sequence of DPV Potato virus Y

Potato virus Y partial gene for polyprotein, coat protein region, genomic RNA, isolate Gansu5

ACC No: AM236801

Dated: 2008-03-18 | Length: 1132 | CRC: 1175196211

                
ID   AM236801; SV 1; linear; genomic RNA; STD; VRL; 1132 BP.
XX
AC   AM236801;
XX
DT   18-MAR-2008 (Rel. 95, Created)
DT   18-MAR-2008 (Rel. 95, Last updated, Version 1)
XX
DE   Potato virus Y partial gene for polyprotein, coat protein region, genomic
DE   RNA, isolate Gansu5
XX
KW   coat protein; polyprotein.
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1132
RA   Li X.;
RT   ;
RL   Submitted (18-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Li X., Plant Protection, Shandong Agricultural University, NO.61, Daizong
RL   Road, Tai'an City, Shandong Province, 271018, CHINA.
XX
RN   [2]
RA   Tian Y., Liu J., Zhu X., Li X., Valkonen J.P.T.;
RT   "Sequences comparisons of Potato virus Y isolates infecting Chinese
RT   tobacco.";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1132
FT                   /organism="Potato virus Y"
FT                   /specific_host="Nicotiana tabacum"
FT                   /lab_host="Nicotiana tabacum"
FT                   /isolate="Gansu5"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Gansu"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .804
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAJ87128.1"
FT                   /translation="GNDTIDAGGSNKKDAKPEQGSIQPNPNKGKDKDVNAGTSGTHTVP
FT                   RIKAITSKMRMPKSKGAAVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVRMAYDIG
FT                   ETEMPTVMNGLMVWCIENGTSPNVNGVWVMMDGNEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAEAYIEMRNKKEPYMPRYGLIRNLRDVGLARYAFDFYEVTSRTPVRAREAHIQMKA
FT                   AALKSAQPRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
FT   mat_peptide     <1. .801
FT                   /product="coat protein"
FT   3'UTR           805. .1132
XX
SQ   Sequence 1132 BP; 352 A; 211 C; 278 G; 291 T; 0 other;

am236801 Length: 1132  18-MAR-2008  Type: N  Check: 246  ..

       1  ggaaatgata caatcgatgc aggaggaagc aacaagaaag atgcaaaacc
      51  agagcaaggc agcatccagc caaacccgaa caaaggaaaa gataaggatg
     101  tgaatgctgg tacatctggg acacatactg tgccgagaat caaggctatc
     151  acgtccaaaa tgagaatgcc caaaagcaag ggagcagccg tgctaaactt
     201  agaacacttg ctcgagtatg ctccacaaca aattgatatt tcaaatactc
     251  gggcaactca atcacagttt gatacgtggt atgaggcagt gcggatggca
     301  tacgacatag gagaaactga gatgccaact gtgatgaatg ggcttatggt
     351  ttggtgcatc gaaaatggaa cctcgccaaa tgtcaacgga gtttgggtta
     401  tgatggatgg gaatgaacaa gttgaatacc cgttgaaacc aatcgttgag
     451  aatgcaaaac caacccttag gcaaatcatg gcacatttct cagatgttgc
     501  agaagcgtat atagaaatgc gcaataaaaa ggaaccatat atgccacgat
     551  atggtttaat tcgaaatctg cgggatgtag gtttagcgcg ctatgccttc
     601  gacttttatg aggtcacatc acgaacacca gtgagggcta gggaagcgca
     651  cattcaaatg aaggccgcag cattgaaatc agcccaacct cgacttttcg
     701  ggttggatgg tggcatcagt acacaagagg agaacacaga gaggcacacc
     751  accgaggatg tctctccaag tatgcatact ctacttggag tcaagaacat
     801  gtgatgtagt gtctctccgg acgatatata agtatttaca tatgcagtaa
     851  gtattttggc ttttcctgta ctacttttat cataattaat aatcagtttg
     901  aatattacta atagatagag gtgacagggt gatttcgtca ttgtggtgac
     951  tctatctgtt aattccgcat tattaagttt tagataaaag tgccgggttg
    1001  tcgttgttgt ggatgattca tcgattaggt gatgttgcga ttctgtcgta
    1051  gcagtgacta cgtctggatc tatctgcttg ggtggtgttg tgatttcgtc
    1101  ataacagtga ctgtaaactt caatcaggag ac