Sequence of DPV Chrysanthemum virus B
Chrysanthemum virus B mRNA for polyprotein, isolate Uttaranchal INDIA
ACC No: AM282556
Dated: 2006-06-19 | Length: 6284 | CRC: 1309675440
ID AM282556; SV 1; linear; genomic RNA; STD; VRL; 6284 BP.
XX
AC AM282556;
XX
DT 19-JUN-2006 (Rel. 88, Created)
DT 19-JUN-2006 (Rel. 88, Last updated, Version 1)
XX
DE Chrysanthemum virus B mRNA for polyprotein, isolate Uttaranchal INDIA
XX
KW alkylated DNA repair protein; polyprotein; RNA dependent RNA polymerase;
KW viral RNA helicase.
XX
OS Chrysanthemum virus B
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Carlavirus.
XX
RN [1]
RP 1-6284
RA Singh L.;
RT ;
RL Submitted (17-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL Singh L., Plant Virus Lab Floriculture Division, Institute of Himalayan
RL Bioresource Tech., P.O. Box - 6, Palampur, Distt. Kangra, Himachal Pradesh
RL 176 061, INDIA.
XX
RN [2]
RA Singh L., Hallan V., Ram R., Zaidi A.A.;
RT "Molecular characterization of genomic RNA of Chrysanthemum virus B";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6284
FT /organism="Chrysanthemum virus B"
FT /specific_host="Chrysanthemum"
FT /isolate="Uttaranchal"
FT /mol_type="genomic RNA"
FT /country="India:Uttaranchal"
FT /virion
FT /db_xref="taxon:12165"
FT CDS <1. .6228
FT /product="polyprotein"
FT /protein_id="CAK54343.1"
FT /translation="TYRSPMEENVGAYDSSVQAAIASTSANYYREAEVSNFQFFNYYLR
FT PIGKRHIIEAGIYLSPYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEF
FT LKLRNSKLSTISKINRFVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPC
FT LKEREAKYLFLHDELHYLNKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYA
FT YEVKKKNFLFYPDGVRSEGHEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSI
FT TRGEAAGPTMRSFGPFNNGVHGLGSPHTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQS
FT SMAKLTQLLPCPTGEEIVFVQEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKI
FT LADVFETVLEISLHEFIKNLEPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIE
FT ERFGRGEYVAVPDRTSAGYYLAKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGT
FT IASINEIAAFFRMICAKPFLRPAKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIG
FT LLWFRSNYKFYQKFLTAQPDGHGTYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCER
FT STDKPTETCGVHGGARSGRVVGRKAESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGG
FT CPPQPQAYSNEEKGAHTVQCPCSVVLSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGVG
FT YSYNGGEHQSLNWPGWISVWMRLVGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGP
FT IYTVNIEGRATFMTTCKEGKTKEITSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSV
FT TFRLMKQICQDEQKDHEETDTSGGKKAGEAEETEQPNTEKENPDEEGAGNEEGEHGSSN
FT SRNKEREQGNDGSDCTNTAESGAEAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFW
FT LCLANELGLCPFRGKKLALEYDLGSAGANETARSCAGEGVYAVDEAIACAASVFRVAIK
FT IYQPELSVMTVFEPTKGERVIYLELSGEHFRLMRIINGCVVKAMASALNRKESEVMHVI
FT EENCDPMMVTSLWNGEGVDLGVFHSLLELFSIKALIFEGSREVLYNREGRFEASFEIKG
FT DHIEHVHRKKGACNALFEECGKTHEVKAESLELLNRAGTLLNYESTLARARRLADSLCS
FT GTTGVVSSSLFNKKPNLFPVQFREKNESLSRDVLAVIGTLGSGKSTILKNFFKINLGRK
FT VLYVSPRRALLNEFQRGVCGCSRNQEERKAARKKGQENWDFMTFETFILKCSNLPSGMA
FT VVLDEIQLYPPGYLDMICYLTKKGVHLIVAGDPCQSDYDNERDRAWLSTMRSDVEQLLE
FT GQSYKFNVQSHRFNNENFRGRLPCEITGKEVAESLSEEHLLYTGCEELVQIMDEYSKIF
FT LVSSFEEKKIIETHFPISEQRKVYTFGESTGLNFKVGTIIITNVSAATSEKRWLTALSR
FT FSENICFVNLLGTDWNGLFGLYKHRALGRFLSKQAQLKDLLDHLPGQPQFQNGLSTLIG
FT RDAGKRKEKLLGDPWLKCMIDLGQAEDAEEVELLEEVMQEEWFKTHLPQADLEGVRARW
FT VHKIMLKEAREVRMGNMVSEQFTDDYPKELGTNLTNAAERFETIYPRHRASDTVTFIMA
FT VKKRLRFSRPAVEKAKLQEAKLYGKFLLNEFLKKVSLKQAHNTTMMERAKFDFEEKKTS
FT KSAATIENHAGRSCRDWLIDVGLIFSKSQLCTKFDNRFRIAKAAQSIVCFQHAVLCRFA
FT PYMRYIEAKLHEVLPSRFYIHSGKGLEELNEWVIKGKFEGICTESDYEAFDASQDQYIV
FT AFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFL
FT RYNIRDSEHICFAGDDLCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHLCPDG
FT IYKKPQLVLERMCIAKEKNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVR
FT IIIKNKKLLKSDILGFYSNIEKQI"
FT mat_peptide 2257. .2622
FT /product="alkylated DNA repair protein"
FT mat_peptide 3781. .4587
FT /product="viral RNA helicase"
FT mat_peptide 5050. .6186
FT /product="RNA dependent RNA polymerase"
XX
SQ Sequence 6284 BP; 1860 A; 1230 C; 1613 G; 1581 T; 0 other;
am282556 Length: 6284 19-JUN-2006 Type: N Check: 9630 ..
1 acatacagaa gtccaatgga ggagaatgtt ggagcatatg actcaagtgt
51 tcaagcagca attgccagca catcagcgaa ttattacagg gaggcagagg
101 taagcaactt ccagtttttc aattattatc ttcgccccat tgggaagcgc
151 cacataattg aagctggtat atacctaagt ccatactcgg cagtaccaca
201 ttcacacgct gcatgtaaga cccttgagaa ccatctattg tataatgtat
251 taccacccct tgtagacaat agatttcatt ttgtaggaat taaacaatca
301 aagttagaat tccttaaatt aaggaatagt aaattaagta ctatatctaa
351 aataaatagg tttgtgacca gtgccgacaa agcaaggtac ggctctgatt
401 ttgtcaagaa ggtgagtaaa ccacatgtag gatttaagcg tcatgaatta
451 caggtagaga caccaacttt gcgtgatctc ttaccttgtt tgaaggagag
501 agaagctaaa tacctctttc ttcacgatga gttgcattac ttgaacaagg
551 aggacttaat cagtttgtta gaagtgctgc agcctgaaat gatgttgggc
601 accatggtgt acccacccga actgctattc ggatctaatc gaagcttgaa
651 cccatggtgt tatgcttatg aggtcaagaa gaaaaatttc cttttttacc
701 ctgatggggt gcggagtgag ggccatgaac agcctttaaa tgggggttac
751 ttgctggaat gtggcaagat taccctagtc gatggcacgg tgtacaaggt
801 tgatatccta tgcagtaaat tcgcgcacca cttggtttcc ataacgcgtg
851 gagaagctgc agggccgact atgcgctcat ttgggccctt caacaacggc
901 gtgcatgggc ttggatcccc ccacacaaga gacgtgtcct gtagcttccc
951 aattccctat gaggtagttt cgaaggttta caggtatttg aagaccctca
1001 ggaagcccga tgaacaatcc tccatggcga aactcacaca actacttcct
1051 tgccctacag gcgaggaaat cgttttcgtg caggaaattc tcaaatcttg
1101 tgatcgccac caacacagtg aaaaccatgg attagtgcag acagggctta
1151 agatcttcat ggggcaagtt actttggagt taagctgccc aaagatcttg
1201 gctgacgttt tcgaaacagt tttagaaata agtctgcatg aattcatcaa
1251 gaatcttgag ccattcacag tcgacgtgca attaaaagaa ctcaagtgga
1301 ataatgtatg gactctagag ttaaaggatg atgggctcgc tgacgagttt
1351 ttagatcctg ttaggatgat cgaagaaagg ttcggccgtg gagaatacgt
1401 cgcagtgcct gacagaacaa gtgccggtta ttaccttgcc aagccaagcc
1451 tggccaaact gcggggtcct ctgatcgaga ttgagcaaag agtgctcagg
1501 atcacgttag ctgctatttg ttacaagagt ttgagtaata gtgatggcac
1551 catcgcttca atcaacgaaa tagctgcttt ctttaggatg atatgcgcca
1601 agcctttctt acgtccggca aaatacaagg tttacgatct ctatggagaa
1651 gggggagcta taggtctaca aaaatacatg agaagtcgtt gggcgcatca
1701 cgttaggttc tactgggcaa acatcggact attgtggttt agaagtaact
1751 acaaatttta ccagaagttt ttgaccgcgc aacccgatgg ccacggcact
1801 tacaagagtt taatgcaccc atggagtaag gtaatgcatg aagtgaccaa
1851 tcaccaattc cactcaagta aaacgagtaa ttactcatgg ctcaggtgtg
1901 agcgcagcac tgataaaccg actgaaacct gcggagtgca tggaggggct
1951 agatcagggc gggtggtagg aagaaaagca gaaagtaagg gcagcgccgg
2001 tggagaagat ccaaaaagtg atcagggcga aggtaaggac caaggggaag
2051 agagacccgt ggatgaagct gctcatggcg gatgccctcc acagccgcag
2101 gcgtactcta atgaagaaaa aggtgcacac acggtgcagt gcccttgcag
2151 tgtcgttttg agcatccgaa atgatggagc tacacgtctc cataaattcc
2201 aaacgccgga ccggctcaaa aataggtacg ccggttttta ctctaaaaat
2251 ggcgtagggt actcgtataa tggaggagag caccaaagcc taaactggcc
2301 tggctggatc agtgtttgga tgagacttgt tggtatacct gaaatttata
2351 actgctgttt ggtgcaacgt tacgacgaga atgcaaaaat tgggatgcac
2401 agtgatgatg aggaatgttt tgtcaccggc ggtcccatat acaccgttaa
2451 tattgagggg cgcgccactt tcatgaccac ctgcaaggaa ggaaagacta
2501 aagaaattac aagttttgaa ctaggacccg gagacttgtt cgagatgccc
2551 gggggcttcc aggagactca taaacatgct gtatttgaga ctagcaaaga
2601 caggctttcc gtgacattta gactaatgaa acaaatctgc caagatgaac
2651 agaaagatca cgaagagaca gacacaagtg gtggaaaaaa agctggggag
2701 gcagaagaga cagagcagcc gaacaccgaa aaagaaaatc cagatgaaga
2751 aggtgctggg aacgaggaag gtgagcatgg gagttcaaac agcagaaaca
2801 aggagcgaga acaaggaaac gacggtagcg attgcacaaa tactgctgaa
2851 tccggggccg aagcttttac caggcatttt aatggctgca aggtgagcgt
2901 gcacgcagaa aaactcccat acacgtacaa tactaccgat tgcggcggta
2951 atggaaactg cttctggctt tgcttagcta atgaattggg cctgtgccct
3001 ttcaggggaa agaaactggc cttggagtac gacctgggtt cagcaggggc
3051 aaatgagact gcgcgcagtt gcgctggaga gggagtgtac gctgtagatg
3101 aagccattgc atgtgcggca agtgtattca gagtcgccat caaaatatac
3151 cagcccgagt tgagtgtcat gaccgttttt gaaccgacta aaggagagcg
3201 agtgatttat ttagaattaa gcggggagca cttcagactc atgcgtataa
3251 tcaatggatg tgtagtcaaa gctatggctt ctgcactcaa tcgcaaagaa
3301 agtgaggtaa tgcatgtgat cgaagaaaat tgtgatccaa tgatggtgac
3351 gagcctttgg aatggtgaag gtgttgactt aggtgttttc cattcactgc
3401 tggaactttt ctcgattaaa gctttgattt ttgagggatc aagggaagtg
3451 ctgtacaaca gggaaggacg ttttgaagct tcttttgaaa taaaaggtga
3501 ccatatagaa cacgtgcata ggaaaaaagg ggcttgcaat gcactgtttg
3551 aagagtgtgg caagactcac gaggtgaagg cagaatctct agagctacta
3601 aatagagcag gtactttgct taattacgag agtacccttg ctagagctag
3651 gagactcgca gatagtttgt gttccggaac aacgggtgtc gtgagctctt
3701 ctttgttcaa caaaaaacca aaccttttcc cggtccaatt tagggagaaa
3751 aatgagtcgc tcagtaggga tgtgcttgca gtgattggca ccttgggatc
3801 gggcaagagc acgattctca aaaacttctt caaaatcaat ttgggtcgca
3851 aggtgttgta cgtatcccca cgtagagccc ttttgaatga attccagaga
3901 ggcgtctgtg gttgctcaag aaatcaagaa gaacgcaaag cggcccggaa
3951 gaaaggccag gagaattggg acttcatgac ttttgagacc ttcatactca
4001 aatgttctaa tttaccttca gggatggctg tcgtacttga tgagatacag
4051 ctgtacccac ctggatacct ggacatgatc tgctatctga caaaaaaggg
4101 cgtgcactta attgttgctg gtgatccttg ccagagtgat tatgataatg
4151 agcgcgatcg tgcatggtta agcacgatgc ggagtgatgt agagcaattg
4201 cttgaaggcc aaagctataa gttcaatgtg cagagccatc gcttcaataa
4251 cgaaaacttt agggggagac tgccctgtga gataactggg aaggaggttg
4301 ctgaatcact ctcggaagaa catttgttgt acacagggtg tgaggagcta
4351 gtgcagatca tggatgagta tagcaagatc ttcctcgtct catcattcga
4401 ggaaaagaaa atcatcgaga cccatttccc cataagtgag cagcggaaag
4451 tgtatacgtt tggagaatcc actggtttga acttcaaagt cggtaccata
4501 atcatcacaa atgtttctgc tgctacctca gagaagcgct ggttaactgc
4551 tctaagtcgt tttagtgaaa acatctgctt tgttaacctt cttgggactg
4601 attggaatgg cctctttggc ctgtacaagc atcgagcttt agggcgcttc
4651 cttagcaagc aagcgcaatt aaaagaccta ctggatcatc tccctggtca
4701 accacagttt cagaatggac tctcaacgtt gataggtagg gatgcaggga
4751 aaagaaagga aaagctcctc ggtgatccct ggctcaagtg tatgatcgat
4801 ctcggtcagg ctgaagatgc agaggaagtt gagctccttg aggaggttat
4851 gcaggaggag tggttcaaga ctcacctacc ccaggctgat ctggaaggtg
4901 tacgtgcaag gtgggtacac aagataatgc ttaaagaagc aagggaagtg
4951 agaatgggta atatggtgtc tgaacaattc acagatgatt atcccaaaga
5001 attgggcact aacctcacga atgctgctga acggttcgag accatctatc
5051 ctaggcatag agcttcagat accgtaacct tcataatggc cgttaaaaaa
5101 agattgaggt tttcacgtcc ggctgtcgag aaagcaaaac ttcaggaggc
5151 caaactgtat gggaagttcc ttctgaatga atttcttaag aaggtgtcgt
5201 tgaagcaggc ccataacacc accatgatgg agcgcgcgaa gtttgatttt
5251 gaggagaaga aaacgagcaa aagtgcggct accatagaga atcatgctgg
5301 ccgctcatgc agggattggt taatagatgt tggactaatc ttctcaaaaa
5351 gccaactgtg cacgaaattt gataataggt ttagaattgc aaaggcagct
5401 cagagtatag tttgctttca acatgctgta ctctgtcgtt tcgcgcccta
5451 catgcgttat attgaggcga agcttcatga ggtcctgccc agcagattct
5501 acatccactc agggaagggt ctagaagaac ttaatgaatg ggttattaag
5551 ggtaagttcg agggcatttg cacagagtca gattatgaag ccttcgatgc
5601 ttcgcaggat cagtacatag tcgcttttga attggctcta atggagtacc
5651 tagggttacc aagggaccta atcgaggatt atgcattcat caagtgccat
5701 ttggggtcta agttaggcaa cttcgccatc atgcggtttt ctggggaagc
5751 tagtaccttc ttgtttaaca caatggccaa catgctattc actttcttgc
5801 gctacaacat tagagatagt gagcacattt gctttgcagg ggatgatttg
5851 tgtgcttctg agcgcctatg catcaagaaa gagcatgagg gcttcttgaa
5901 taaattaaaa ctgaaggcta aagtgttctt tgtggataag cctactttct
5951 gtggatggca cctatgtccg gacggcatat ataagaagcc tcaattagtg
6001 ctagagcgta tgtgtattgc taaggaaaag aataatttgg ccaattgttt
6051 ggacaattat gcaattgagg tctcttacgc atacaaactt ggcgaacggg
6101 ctgttaatag gatggacgaa gaagaattgg aagcagccta caactgtgtc
6151 cggataatca tcaagaataa aaagctccta aagtctgaca tactcgggtt
6201 ttattccaac attgaaaaac aaatttaaat acgcttaggt tgtagctata
6251 ggattgttat atggatgtgt tagttaattt gttg