Sequence of DPV Chrysanthemum virus B
Chrysanthemum virus B gene for polyprotein, isolate Punjab INDIA
ACC No: AM285298
Dated: 2006-06-30 | Length: 6296 | CRC: 1372651560
ID AM285298; SV 1; linear; genomic RNA; STD; VRL; 6296 BP.
XX
AC AM285298;
XX
DT 30-JUN-2006 (Rel. 88, Created)
DT 30-JUN-2006 (Rel. 88, Last updated, Version 1)
XX
DE Chrysanthemum virus B gene for polyprotein, isolate Punjab INDIA
XX
KW alkylated DNA repair protein; polyprotein; RNA dependent RNA polymerase;
KW viral RNA helicase.
XX
OS Chrysanthemum virus B
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Carlavirus.
XX
RN [1]
RP 1-6296
RA Singh L.;
RT ;
RL Submitted (28-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL Singh L., Plant Virus Lab Floriculture Division, Institute of Himalayan
RL Bioresource Tech., P.O. Box - 6, Palampur, Distt. Kangra, Himachal Pradesh
RL 176 061, INDIA.
XX
RN [2]
RA Singh L., Hallan V., Ram R., Zaidi A.A.;
RT "Molecular characterization of genomic RNA of Chrysanthemum virus B";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6296
FT /organism="Chrysanthemum virus B"
FT /specific_host="Chrysanthemum"
FT /isolate="Punjab INDIA"
FT /mol_type="genomic RNA"
FT /country="India:Punjab"
FT /virion
FT /db_xref="taxon:12165"
FT CDS <1. .6240
FT /product="polyprotein"
FT /protein_id="CAK97712.1"
FT /translation="TYRSPMEENVGAYDSSVQAAIASTSANYHREAEVSNFQFFNYYLR
FT PIAKRHLIEAGIYLSPYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEF
FT LKLRNSKLSTISKINRFVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPC
FT LKEREAKYLFLHDELHYWSKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYA
FT YEVKKKNFLFYPDGVRSEGYEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSI
FT TRGEAAGPTMRSFGPFEATACNGLDPLTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQS
FT SMAKLTQLLPCPTGEEIVFVQEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKI
FT LADVFETVLEISLHEFIKNLEPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIE
FT ERFGRGEYVAVPDRTSAGYYLAKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGT
FT IASINEIAAFFRMICAKPFLRPAKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIG
FT LLWFRSNYKFYQKFLTAQPDGHGTYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCER
FT STDKPTETCGVHGGARSEAVGGGRKKAESKGSAGVEDPKSDQGEGKDQGEERPVDEAAH
FT GELPFHRPQAYFNEEKGCTHGGSGPCSVVLSIRNDGATRLHKFPNAGPAQNRYAGFYSK
FT NGVGYSYNGGEHQSLNWPGWISVWMRLVGIPEIYNCCLVQRYDENAKIGMHSDDEECFV
FT TGGPIYTVNIEGRATFMTTCKEGKTKEITSFELGPGDLFEMPGGFQETHKHAVFETSKD
FT RLSVTFRLMKQICQDEQKDHEETDTSGGKKAGEAEETEQPNTEKENPDEEGAGNEEGEH
FT GSSNSRNKEREQGNDGSDCTNTAESGAEAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNG
FT NCFWLCLANELGLCPFRGKKLALEYDLGSAGANETARSCAGEGVYAVDEAIACAASVFR
FT VAIKIYQPELSVMTVFEPTKGERVIYLELSGEHFRLMRIINGCVVKAMASALNRKESEV
FT MHVIEENCDPMMVTSLWNGEGVDLGVFHSLLELFSIKALIFEGSREVLYNREGRFEASF
FT EIKGDHIEHVHRKKGACNALFEECGKTHEVKAESLELLNRAGTLLNYESTLARARRLAD
FT SLCSGTTGVVSSSLFNKKPNLFPVQFREKNESLSRDVLAVIGTLGSGKSTILKNFFKIN
FT LGRKVLYVSPRRALLNEFQRGVCGCSRNQEERKAARKKGQENWDFMTFETFILKCSNLP
FT SGMAVVLDEIQLYPPGYLDMICYLTKKGVHLIVAGDPCQSDYDNERDRAWLSTMRSDVE
FT QLLEGQSYKFNVQSHRFNNENFRGRLPCEITEKNVAEPRLEEHLLYTGCEELVLIMDEY
FT SKVFLVSSFEEKKIIETHFPVCEQRKVYTFGESTGLNFRVGTIIITNVSAATSEKRWLT
FT ALSRFSDNVCFVNLLGTDWNGLFGLYKHRALGHFLSKRAQLKDLLDHLPGQPQFQNGFS
FT TLIGKDAGKREEKLIGDPWLKCMIDLGQTEDVEEVELLEEVMQEEWFKTHLPQADLEGV
FT RARWVHKIMLKEAREVRMGDIVSEQFTDDYPKELGTNLTNAAERFETIYPRHRASDTVT
FT FIMAVKKRLRFSRPAVEKAKLQEAKLYGQFLLNEFLKKVPLKQAHNTTMMERAKFDFEE
FT KKTSKSAVIIENHAGRSCRDWMIEVGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVL
FT CRFAPYMRYIEAKLHEALPSRFYIHSGKGLDELNEWVIKGKFEGICTESDYEAFDASQD
FT QYIVAFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMAIML
FT FTFLRYNIKDSEHINSIGDDMCASEPPCIKKEHEGFLSKLKLKAKVFFLAKPTLCGWHL
FT CSDGIYKKPQLVLERMGSAKEKNNLANCLDNYAIEVSYAYNLRERAVNRMDEEELEAAY
FT NCVRIIIKNKKLLKSDILSFYSSIEKQI"
FT mat_peptide 2272. .2634
FT /product="alkylated DNA repair protein"
FT mat_peptide 3796. .4599
FT /product="viral RNA helicase"
FT mat_peptide 5065. .6198
FT /product="RNA dependent RNA polymerase"
XX
SQ Sequence 6296 BP; 1854 A; 1233 C; 1621 G; 1588 T; 0 other;
am285298 Length: 6296 30-JUN-2006 Type: N Check: 4807 ..
1 acatacagaa gtccaatgga ggagaatgtt ggtgcatatg actcaagtgt
51 tcaagcagca attgccagca catcagcgaa ttatcacagg gaggcagagg
101 taagcaactt ccagtttttc aattattatc ttcgccccat tgcgaagcgc
151 cacttaattg aagctggtat atacctaagt ccatactcgg cagtaccaca
201 ttcacacgcc gcatgtaaga cccttgagaa ccatctattg tataatgtat
251 taccacccct tgtagacaat agatttcatt ttgtaggaat taaacaatca
301 aagttagaat tccttaaatt aaggaatagt aaattaagta ctatatctaa
351 aataaatagg tttgtgacca gtgccgacaa agcaaggtac ggctctgatt
401 ttgtcaagaa ggtgagtaaa ccacatgtag gatttaagcg tcatgaatta
451 caggtagaga caccaacttt gcgtgatctc ttaccttgtt tgaaggagag
501 agaagctaaa tacctctttc ttcacgatga gttgcattac tggagcaagg
551 aggacttaat cagtttgtta gaagtgctgc agcctgaaat gatgttgggc
601 accatggtgt acccacccga actgctattc ggatctaatc gaagcttgaa
651 cccatggtgt tatgcttatg aggtcaagaa gaaaaatttc cttttttacc
701 ctgatggggt gcggagtgag ggctatgaac agcctttaaa cgggggttac
751 ttgctggaat gtggcaagat taccctcgtc gacggcacgg tgtacaaggt
801 tgatatccta tgcagtaaat tcgcgcacca cttagtctct attacgcgtg
851 gagaagctgc agggccgact atgcgctcat ttgggccctt cgaagcgacg
901 gcgtgcaatg gcttggatcc cctcactaga gacgtgtcct gtagcttccc
951 aattccctat gaggtagttt cgaaggttta caggtatttg aagaccctca
1001 ggaagcccga tgaacaatcc tccatggcga aactcacaca actacttcct
1051 tgccctacag gcgaggaaat cgttttcgtg caggaaattc tcaaatcttg
1101 tgatcgccac caacacagtg aaaaccatgg attagtgcag acagggctta
1151 agatcttcat ggggcaagtt actttggagt taagctgccc aaagatcttg
1201 gctgacgttt tcgaaacagt tttagaaata agtctgcatg aattcatcaa
1251 gaatcttgag ccattcacag tcgacgtgca attaaaagaa ctcaagtgga
1301 ataatgtatg gactctagag ttaaaggatg atgggctcgc tgacgagttt
1351 ttagatcctg ttaggatgat cgaagaaagg ttcggccgtg gagaatacgt
1401 cgcagtgcct gacagaacaa gtgccggtta ttaccttgcc aagccaagcc
1451 tggccaaact gcggggtcct ctgatcgaga ttgagcaaag agtgctcagg
1501 atcacgttag ctgctatttg ttacaagagt ttgagtaata gtgatggcac
1551 catcgcttca atcaacgaaa tagctgcttt ctttaggatg atatgcgcca
1601 agcctttctt acgtccggca aaatacaagg tttacgatct ctatggagaa
1651 gggggagcta taggtctaca aaaatacatg agaagtcgtt gggcgcatca
1701 cgttaggttc tactgggcaa acatcggact attgtggttt agaagtaact
1751 acaaatttta ccagaagttt ttgaccgcgc aacccgatgg ccacggcact
1801 tacaagagtt taatgcaccc atggagtaag gtaatgcatg aagtgaccaa
1851 tcaccaattc cactcaagta aaacgagtaa ttactcatgg ctcaggtgtg
1901 agcgcagcac tgataaaccg actgaaacct gcggagtgca tggaggggct
1951 agatcagaag cagtgggcgg tggtaggaag aaagcagaaa gcaagggcag
2001 cgccggtgta gaagatccaa aaagtgatca gggcgaagga aaggaccaag
2051 gggaagagag acccgtggat gaagctgctc atggcgaatt gcccttccac
2101 aggccgcagg cgtactttaa tgaagaaaaa gggtgcacac acggtggcag
2151 tggcccttgc agtgtcgttt tgagcatccg aaatgatgga gctacacgtc
2201 tccataaatt cccaaacgcc ggaccggctc aaaataggta cgccggtttt
2251 tactctaaaa atggcgtagg gtactcgtat aatgggggag agcaccaaag
2301 cctaaactgg cctggctgga tcagtgtttg gatgagactt gttggcatac
2351 ctgaaattta taactgctgt ttggtgcaac gttacgacga gaatgcaaaa
2401 attgggatgc acagtgatga tgaggaatgt tttgtcaccg gcggtcccat
2451 atacaccgtt aatattgagg ggcgcgccac tttcatgacc acctgcaagg
2501 aaggaaagac taaagaaatt acaagttttg aactaggacc cggagacttg
2551 ttcgagatgc ccgggggctt ccaggagact cataaacatg ctgtatttga
2601 gactagcaaa gacaggcttt ccgtgacatt tagactaatg aaacaaatct
2651 gccaagatga acagaaagat cacgaagaga cagacacaag tggtggaaaa
2701 aaagctgggg aggcagaaga gacagagcag ccgaacaccg aaaaagaaaa
2751 tccagatgaa gaaggtgctg ggaacgagga aggtgagcat gggagttcaa
2801 acagcagaaa caaggagcga gaacaaggaa acgacggtag cgattgcaca
2851 aatactgctg aatccggggc cgaagctttt accaggcatt ttaatggctg
2901 caaggtgagc gtgcacgcag aaaaactccc atacacgtac aatactaccg
2951 attgcggcgg taatggaaac tgcttctggc tttgcttagc taatgaattg
3001 ggcctgtgcc ctttcagggg aaagaaactg gccttggagt acgacctggg
3051 ttcagcaggg gcaaatgaga ctgcgcgcag ttgcgctgga gagggagtgt
3101 acgctgtaga tgaagccatt gcatgtgcgg caagtgtatt cagagtcgcc
3151 atcaaaatat accagcccga gttgagtgtc atgaccgttt ttgaaccgac
3201 taaaggagag cgagtgattt atttagaatt aagcggggag cacttcagac
3251 tcatgcgtat aatcaatgga tgtgtagtca aagctatggc ttctgcactc
3301 aatcgcaaag aaagtgaggt aatgcatgtg atcgaagaaa attgtgatcc
3351 aatgatggtg acgagccttt ggaatggtga aggtgttgac ttaggtgttt
3401 tccattcact gctggaactt ttctcgatta aagctttgat ttttgaggga
3451 tcaagggaag tgctgtacaa cagggaagga cgttttgaag cttcttttga
3501 aataaaaggt gaccatatag aacacgtgca taggaaaaaa ggggcttgca
3551 atgcactgtt tgaagagtgt ggcaagactc acgaggtgaa ggcagaatct
3601 ctagagctac taaatagagc aggtactttg cttaattacg agagtaccct
3651 tgctagagct aggagactcg cagatagttt gtgttccgga acaacgggtg
3701 tcgtgagctc ttctttgttc aacaaaaaac caaacctttt cccggtccaa
3751 tttagggaga aaaatgagtc gctcagtagg gatgtgcttg cagtgattgg
3801 caccttggga tcgggcaaga gcacgattct caaaaacttc ttcaaaatca
3851 atttgggtcg caaggtgttg tacgtatccc cacgtagagc ccttttgaat
3901 gaattccaga gaggcgtctg tggttgctca agaaatcaag aagaacgcaa
3951 agcggcccgg aagaaaggcc aggagaattg ggacttcatg acttttgaga
4001 ccttcatact caaatgttct aatttacctt cagggatggc tgtcgtactt
4051 gatgagatac agctgtaccc acctggatac ctggacatga tctgctatct
4101 gacaaaaaag ggcgtgcact taattgttgc tggtgatcct tgccagagtg
4151 attatgataa cgaacgtgat cgagcatggc taagcactat gagaagtgat
4201 gtggaacaac tgcttgaggg ccaaagctat aagttcaatg tgcagagtca
4251 tcgcttcaat aatgagaatt tcaggggtcg gctgccttgc gaaattactg
4301 agaaaaatgt tgcggagcca cggttggaag agcatttgtt gtacacaggg
4351 tgtgaggagt tagtgctgat catggatgaa tatagtaagg ttttcctcgt
4401 ttcctctttc gaggaaaaga aaattattga gacccatttc cctgtgtgcg
4451 agcaacggaa agtgtacaca tttggtgaat ctactggttt gaatttcaga
4501 gtgggtacca taatcatcac aaatgtctca gctgccacct cagagaaacg
4551 ctggttaaca gccctgagcc gatttagtga taatgtctgt ttcgtcaacc
4601 tcttgggaac tgactggaat ggtctatttg gtttgtataa acatcgagct
4651 ttgggtcact tccttagtaa gagggcgcag ttgaaagacc tattggacca
4701 cttaccaggc caaccacaat tccagaatgg tttctcaacg ttaataggta
4751 aggacgcagg gaaaagggaa gaaaagctca ttggtgatcc gtggcttaag
4801 tgcatgattg atctaggtca gactgaggat gtggaggaag tggagctcct
4851 tgaggaagtt atgcaagaag aatggttcaa aactcaccta ccccaagccg
4901 acctggaggg cgtacgtgct aggtgggtac acaagataat gctcaaagag
4951 gcaagggaag tgcgaatggg tgacattgtg tctgaacaat tcacagatga
5001 ttatcccaaa gaattgggaa ccaatctcac gaatgcagct gagcgtttcg
5051 agaccattta ccctaggcat agagcttcag ataccgtgac cttcataatg
5101 gctgttaaaa aacggttgag attttcacga ccggctgttg agaaagcgaa
5151 acttcaggaa gccaaactgt atgggcaatt ccttctgaat gaatttctca
5201 agaaagtacc tttgaagcaa gctcataaca ctactatgat ggagcgagca
5251 aagtttgatt ttgaggaaaa gaaaacaagc aaaagtgcgg tcattataga
5301 gaatcatgcg ggtcggtcat gtagagactg gatgattgaa gtagggctca
5351 tcttctccaa aagtcaatta tgcacaaagt ttgataatag gtttagggtc
5401 gcgaaggcag cacagagtat tgtttgcttc caacacgccg tactttgccg
5451 tttcgcgcct tatatgcgct acattgaagc taaactccat gaggcgctac
5501 ctagcagatt ctatattcac tcagggaagg gtctggatga gcttaatgag
5551 tgggttatca agggcaaatt cgagggcatc tgcactgagt cagattatga
5601 ggccttcgac gcttctcagg atcagtatat tgttgctttt gagttagccc
5651 taatggagta tctaggtttg ccaagggact taattgagga ctacgcgttc
5701 atcaagtgtc atttagggtc caaattaggc aacttcgcga tcatgcggtt
5751 ttccggggag gctagtacgt ttctgtttaa tactatggcc atcatgctct
5801 tcaccttctt gcgatacaat attaaagaca gcgagcacat caactcaatt
5851 ggggatgaca tgtgcgcatc cgaacccccg tgcatcaaga aagagcatga
5901 gggttttttg agcaagttaa aattgaaagc caaagtattc tttctggcta
5951 aaccaactct ttgcggatgg catctctgtt ctgatgggat atataagaag
6001 ccgcagttgg tattggaacg tatgggtagt gctaaagaga agaataatct
6051 agccaactgt ctagacaatt acgccattga ggtttcctac gcctataacc
6101 tccgtgagcg agcggttaat aggatggatg aggaggagtt ggaggctgcc
6151 tacaattgcg tcaggataat catcaagaat aagaagctcc taaagtccga
6201 tatccttagt ttttactcta gtatcgagaa acaaatttaa atacgcttag
6251 gttgaagcta taggattgtt ataaggatgt gttagttaat ttgttg