Sequence of DPV Chilli leaf curl virus
Pepper leaf curl Lahore Virus-[Pakistan:Lahore1:2004] segment A, complete sequence, clone BpAL 4(3)
ACC No: AM404179
Dated: 2010-09-15 | Length: 2747 | CRC: 1376510379
ID AM404179; SV 1; circular; genomic DNA; STD; VRL; 2747 BP.
XX
AC AM404179;
XX
DT 10-JAN-2009 (Rel. 98, Created)
DT 15-SEP-2010 (Rel. 106, Last updated, Version 2)
XX
DE Pepper leaf curl Lahore Virus-[Pakistan:Lahore1:2004] segment A, complete
DE sequence, clone BpAL 4(3)
XX
KW AC1 gene; AC4 gene; AC4 protein; AV1 gene; coat protein; CP gene;
KW pre-coat protein; REn gene; replication enhancer protein;
KW replication-associated protein; transcriptional activator protein;
KW TrAP gene.
XX
OS Pepper leaf curl Lahore Virus-[Pakistan:Lahore1:2004]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2747
RA Tahir M.;
RT ;
RL Submitted (01-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL Tahir M., School of Biological Sciences, University of the Punjab, School
RL of Biological Sciences, University of the Punjab, Lahore, Pakistan, Punjab,
RL 54590, PAKISTAN.
XX
RN [2]
RA Tahir M., Haider M.S., Briddon R.W.;
RT "Chili leaf curl betasatellite is associated with a distinct recombinant
RT begomovirus, Pepper leaf curl Lahore virus, in Capsicum in Pakistan";
RL Virus Res. 149:109-114(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2747
FT /organism="Pepper leaf curl Lahore
FT Virus-[Pakistan:Lahore1:2004]"
FT /segment="A"
FT /host="Capsicum annuum var. grossum"
FT /isolate="Pakistan/Lahore1/2004"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Punjab, Lahore"
FT /isolation_source="leaf"
FT /collection_date="02-Jun-2004"
FT /clone="BpAL 4(3)"
FT /db_xref="taxon:884612"
FT CDS 145. .501
FT /transl_table=1
FT /gene="AV1"
FT /product="pre-coat protein"
FT /db_xref="GOA:B7ZEB2"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B7ZEB2"
FT /protein_id="CAL49065.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL
FT ISVIRARNYVEASSRYNHFHARFEGTPPSQPRQPICQPCCCPHCPRHKGKSMGQQAHES
FT EAQDVQDVQEPRCS"
FT CDS 305. .1075
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /function="encapsulation"
FT /db_xref="GOA:B7ZEB3"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B7ZEB3"
FT /protein_id="CAL49066.1"
FT /translation="MSKRPADIIISTPASKVRRRLNLDSPYASRAAAPIVRVTKARAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGRRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1072. .1476)
FT /transl_table=1
FT /gene="REn"
FT /product="replication enhancer protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B7ZEB4"
FT /protein_id="CAL49067.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNRDI
FT ITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLLFLNNLAVISINN
FT VIRAVDHVLWHVLAQTIHVQSSNIIKFNLY"
FT CDS complement(1217. .1621)
FT /transl_table=1
FT /gene="TrAP"
FT /product="transcriptional activator protein"
FT /db_xref="GOA:B7ZEB5"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B7ZEB5"
FT /protein_id="CAL49068.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPIFQDNRAPQQAIPEEPRHHHRADTVQSQP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT CDS complement(1524. .2609)
FT /transl_table=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /function="replication"
FT /db_xref="GOA:B7ZEB6"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B7ZEB6"
FT /protein_id="CAL49069.1"
FT /translation="MTRTQSFCVNAKNIFLTYPKCPIPKEQMLDILRSINCPSDKLFIR
FT VAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNASQFHPNFQGAKSSSDVKSYI
FT EKDSDYIDWGQFQIDGRYGRGGQQTANDAAAEALNAGSAEAALAIIREKLLKDFIFQYH
FT NLKSNLDRIFQPPAEVYVSPCCSSSFDQVPTELEEWAAQNVVSAAARPLRPMSIVLEGE
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVINDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALRNWALKNATFITLEGPL
FT YSGSNQSATQASQEGDQASSR"
FT CDS complement(2195. .2452)
FT /transl_table=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B7ZEB7"
FT /protein_id="CAL49070.1"
FT /translation="MGLCISTPSSNSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA
FT LMSSPTSRRTVITSTGVSFRSMEDMVEEVNRQLMMLQQRP"
XX
SQ Sequence 2747 BP; 730 A; 573 C; 646 G; 798 T; 0 other;
am404179 Length: 2747 15-SEP-2010 Type: N Check: 7012 ..
1 accggatggc cgcgattttt ttaagtgggc cccacaacgc acgtgctgac
51 aaagacatgt ggaccaatta aaaccgcccc tcatatctta attgtttcat
101 ggtcccccct ataaactagg gctccaagta gtgcactctt accaatgtgg
151 gatccattag taaacgagtt tcctgaaacc gttcacggtt ttaggtgtat
201 gttagcagtt aaatatctgc agctagtaga aaatacatat tccccagaca
251 ctctgggcta cgatttaatt agggatttaa tttcagttat tagggctaga
301 aattatgtcg aagcgtccag cagatataat catttccacg cccgcttcga
351 aggtacgccg ccgtctcaac ctcgacagcc catatgccag ccgtgctgct
401 gcccccattg tccgcgtcac aaaggcaaga gcatgggcca acaggcccat
451 gaatcggaag cccaggatgt acaggatgta caggagccca gatgttccta
501 gggggtgtga aggcccatgt aaggtccagt cttttgagtc taggcacgat
551 gtagttcata tagggaaggt tatgtgtatt agtgatgtta cccgtggtac
601 tggtttaacc catagagtag gtaggcgttt ctgtgttaag tctgtgtatg
651 tattagggaa gatatggatg gatgagaata tcaagaccaa gaatcacacg
701 aatagtgtga tgttctttct tgtccgtgat cgtcgtcctg ttgataaacc
751 acaagatttt ggagaggtgt tcaacatgtt tgacaacgag cctagcactg
801 caaccgtgaa gaatatgcat agagatcgtt atcaggtctt gaggaaatgg
851 cacgcaacgg ttactggtgg ccagtacgct tcgaaggaac aggcattagt
901 taagaagttc gttagggtta acaattatgt tgtgtataac cagcaggagg
951 ctggaaaata tgaaaatcac acagagaatg ctctgatgtt gtacatggca
1001 tgtactcatg cctctaaccc tgtgtatgcg acgttgaaga tacggatcta
1051 tttctatgat tcagtatcga attaataaag attgaatttt attatatttg
1101 aactttgtac atgaattgtt tgtgctaata catgccataa tacatggtcg
1151 acagctctaa ttacattgtt tatactaatt acagctaaat tatttaaaaa
1201 cagcaacact tgggtcctaa atacccttaa gaaatgacca gtctgaggct
1251 gtaaggtcgt ccagattcgg aaggttagaa aacatttgtg tatccccaac
1301 gctttcctca ggttgtgatt gaactgtatc tgcacggtga tgatgtctcg
1351 gttcctcagg aatggcctgt tgtggtgctc ggttatcttg aaatataggg
1401 gatttgttat ctcccagata aacacgccat tctctgcctg agctgcagtg
1451 atgggttccc ctgtgcgtga atccatagcc gtggcagcgt aatgcgatga
1501 aatatgaaca gccgcaatct aggtcaacgc gacgacgcct ggtccccttc
1551 ttggctagcc tgtgttgcac tttgattgga acctgagtag agtgggcctt
1601 cgagggtgat gaaggtcgca ttctttaaag cccaatttct tagtgcgcta
1651 tttttctctt catccaagaa ctctttatag ctagaattgg gtcctggatt
1701 gcagaggaag atagcgggaa ttccaccttt aatttgaact ggctttccgt
1751 attttgtgtt ggattgccag tccctttggg cccccatgaa ttccttaaag
1801 tgctttagat aatgcggatc aacgtcatta atgacgttat accaggcgtc
1851 gttattgtag acctttgggc taaggtcgag atgtccacac aaatagttgt
1901 gtggtcccag ggacctggcc cacattgtct tccccgttct actctcaccc
1951 tccaacacta tactcatggg tcttaaaggc cgcgcagcgg cactgacaac
2001 gttctgtgca gcccactcct caagttctgt cggaacttga tcaaaagaag
2051 aagaacaaca aggagaaaca taaacctccg ctggaggttg aaaaatccta
2101 tctaaattag attttaaatt atgatattga aaaataaaat ctttgaggag
2151 tttctccctt attattgcta aagctgcttc agccgaaccc gcatttaagg
2201 cctctgctgc agcatcatta gctgtctgtt gacctcctcg accatatctt
2251 ccatcgatct gaaactgacc ccagtcgatg taatcactgt ccttctcgat
2301 gtaggacttg acatcagagc tggacttagc tccctggaag tttgggtgga
2351 attgggaggc gttattaggg tgagtgacat cgaaatgtct ggggtttctg
2401 aacttggatt tacctttgaa ttggatgagg gcgtggatat gcagagaccc
2451 atcctggtgt ttctcttgtg ccactctgat aaatagttta tcagatgggc
2501 aatttatcga ccgaagaatg tcgagcattt gttctttggg tattgggcat
2551 ttggggtaag taaggaagat attttttgca ttaacacaaa acgactgcgt
2601 acgagtcata ttgaattggg gacactcaaa actctgagga atgggggaca
2651 ctggggacgc ttttatatgg tgtccccaaa ttgcaaattg gtaatttgca
2701 caactttaat tcaaattccc gagaatcgcg gccatccgta taatatt