Sequence of DPV Thailand passionflower potyvirus

Passionfruit woodiness potyvirus Pangda15 gene for partial polyprotein, isolate Pangda15, genomic RNA

ACC No: AM409188

Dated: 2006-12-26 | Length: 1455 | CRC: -1629943880

                
ID   AM409188; SV 1; linear; genomic RNA; STD; VRL; 1455 BP.
XX
AC   AM409188;
XX
DT   26-DEC-2006 (Rel. 90, Created)
DT   26-DEC-2006 (Rel. 90, Last updated, Version 1)
XX
DE   Passionfruit woodiness potyvirus Pangda15 gene for partial polyprotein,
DE   isolate Pangda15, genomic RNA
XX
KW   coat protein; nuclear polymerase protein; polyprotein.
XX
OS   Passionfruit woodiness potyvirus Pangda15
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1455
RA   Chiemsombat P.;
RT   ;
RL   Submitted (26-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Chiemsombat P., Plant Pathology, Kasetsart University, 1 Malaiman Road,
RL   Khamphaengsaen District, Nakhon Pathom 73140, THAILAND.
XX
RN   [2]
RA   Chiemsombat P., Prammanee S., Pipattanawong N., Warin N.;
RT   "Characterization of a potyvirus associated with woodiness symptom of
RT   purple passionfruit in Thailand";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1455
FT                   /organism="Passionfruit woodiness potyvirus Pangda15"
FT                   /isolate="Pangda15"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="purple passionfruit"
FT                   /identified_by="Pissawan Chiemsombat"
FT                   /virion
FT                   /PCR_primers="fwd_name: Unipoty, fwd_seq:
FT                   ggnaayaayagyggncarcc, rev_name: CAMV CP-R, rev_seq:
FT                   ccaagcttttactgcggggaac"
FT                   /db_xref="taxon:409945"
FT   CDS             <1. .1455
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAL64771.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVISVYYSCFKQGWSAKDIAERLVFFANG
FT                   DDIILAVQEEDEWLYNCLGSSFAELGLNYDFSERTKKREELWFMSHQAKEVDGLYIPKL
FT                   EPERIVSILEWDRSKEFMHRTEAICAAMIEAWGHTELLTEIRKFYLWLLQKDEFKELAA
FT                   EGKTPYIAEKCVEKALPDKDARMDELQAYLQVLDFEHAEGCGESVSLQSGKVDDVDTGN
FT                   TGKDKKKEVEQLKNPNLGKAGDIRDKDVGSSSKGRIVPRLQKITKKMNLPMVKGKVILD
FT                   LDHLIDYKPNQTDLFNTRATKNQFDSWYNAVKNEYELDGWFKRMLSGMVSMVWCMENAT
FT                   SPDVNGVWVLMHGDEQIEYPLKPMVENAKRTLRQIMHHFSDAAEAYIEMRNSEGLYMPR
FT                   YGLLRNLRDKSLARYAFDFYEVTSKTSDRAKEAVTQMKAAALVGTTNKMFGLDGSVSTI
FT                   GEDTERHTARDVNQNMHSLLGVGSVQ"
FT   mat_peptide     <1. .633
FT                   /product="nuclear polymerase protein"
FT   mat_peptide     634. .1455
FT                   /product="coat protein"
XX
SQ   Sequence 1455 BP; 477 A; 255 C; 368 G; 355 T; 0 other;

am409188 Length: 1455  26-DEC-2006  Type: N  Check: 4444  ..

       1  ggcaacaaca gcgggcaacc ctctacagtg gtggataata ctttgatggt
      51  ggttatttct gtctactact catgcttcaa acaagggtgg agtgcgaaag
     101  acattgctga aaggcttgtt ttctttgcta atggtgacga tatcatattg
     151  gcagtccagg aggaggatga gtggctatac aactgtcttg gatcatcttt
     201  cgcagagcta gggttgaact atgactttag tgaaagaaca aagaaaagag
     251  aagagttgtg gtttatgtca catcaggcaa aagaggttga cggcttgtac
     301  attccaaagt tagagccaga aaggattgtg tcaatacttg aatgggatag
     351  aagcaaagaa tttatgcata gaactgaagc catttgcgca gcaatgattg
     401  aagcttgggg tcacacagaa ttgttgacag aaatacgtaa gttttacttg
     451  tggttactcc agaaggatga gttcaaagag cttgcagctg aaggtaaaac
     501  accttacatt gcagaaaagt gcgttgagaa agctctaccc gacaaagatg
     551  cccgaatgga tgaactacaa gcttacttac aggtattgga ctttgagcat
     601  gcagagggtt gtggagaatc agtctcacta cagtctggaa aggttgatga
     651  tgttgataca ggcaacacag gcaaggacaa aaagaaagaa gttgagcaac
     701  tcaaaaatcc aaatcttgga aaagctggtg atatacgaga caaggatgtt
     751  ggcagtagct caaaagggcg cattgtaccc aggttgcaga aaatcacaaa
     801  gaaaatgaac ttaccaatgg taaaaggcaa agtaattctt gaccttgatc
     851  acttgattga ttacaagcct aaccagacag atttgttcaa cactagagca
     901  accaagaacc aatttgactc atggtacaat gctgtcaaaa atgaatatga
     951  gttggatgga tggttcaaaa gaatgttatc aggaatggtt tccatggtgt
    1001  ggtgcatgga aaatgccacc tcaccagatg tcaatggggt gtgggtattg
    1051  atgcacggag atgaacaaat tgagtaccca ctcaagccaa tggttgaaaa
    1101  tgcaaagcgg acattaagac aaatcatgca ccatttttca gatgcggctg
    1151  aagcatacat tgaaatgagg aattctgaag gactgtacat gcctaggtat
    1201  ggtcttctca ggaacctgag ggacaaaagt ctggcgcgat atgcattcga
    1251  tttctatgag gtcacctcta agacgtcaga tagagctaaa gaagctgtta
    1301  cacaaatgaa ggcagccgcc ctcgttggca ctacaaataa aatgtttgga
    1351  ttggatggta gtgtcagcac aattggcgaa gatactgaga ggcacactgc
    1401  aagggacgtt aaccagaaca tgcactccct tctcggagtg ggttcagtgc
    1451  agtaa