Sequence of DPV Turnip mosaic virus
Turnip mosaic virus partial gene for polyprotein, isolate G32, genomic RNA
ACC No: AM410980
Dated: 2006-11-15 | Length: 1374 | CRC: 700065515
ID AM410980; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
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AC AM410980;
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DT 15-NOV-2006 (Rel. 89, Created)
DT 15-NOV-2006 (Rel. 89, Last updated, Version 1)
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DE Turnip mosaic virus partial gene for polyprotein, isolate G32, genomic RNA
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KW HC-Pro protein; helper component proteinase; polyprotein.
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OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1374
RA Shi M.L.;
RT ;
RL Submitted (09-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL Road,Hangzhou, Zhejiang,310029, CHINA.
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RN [2]
RA Shi M.L., Schubert J.;
RT "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1374
FT /organism="Turnip mosaic virus"
FT /specific_host="Brassica napus ssp. napus"
FT /isolate="G32"
FT /mol_type="genomic RNA"
FT /country="Germany"
FT /virion
FT /db_xref="taxon:12230"
FT CDS <1. .>1374
FT /product="polyprotein"
FT /protein_id="CAL69573.1"
FT /translation="GAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLAQLRDVIKSSYPRFKHAVQILDRYEQ
FT SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT RYLKNRTENIEKGSLKSFRNKVSQKAHINPTLMCDNQLDKNGNFIWGERGYHAKPFFSN
FT YFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMRGEPVEPYPVTVECV
FT SKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVSELGKCPSLLDVATACYFLKVFYPDV
FT ANAELPRMLVDHKTKMIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT "
FT mat_peptide 1. .1374
FT /standard_name="HC-Pro protein"
FT /product="helper component proteinase"
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SQ Sequence 1374 BP; 432 A; 291 C; 330 G; 321 T; 0 other;
am410980 Length: 1374 15-NOV-2006 Type: N Check: 1906 ..
1 ggtgcagcgg gagctaactt ctggaaaggt ttcgacagat gctttcttgc
51 ataccgcagc gataatcgag agcacacatg ctactcgggc ttagacgtca
101 ctgaatgtgg cgaagttgca gcactgatgt gtttggccat gtttccatgt
151 ggaaagataa catgccctga ctgcgttaca gacagcgaac tatcccaagg
201 gcaggcgagt ggaccatcca tgaagcacag gttggcacag ttacgtgatg
251 tcattaaatc tagttatcca cggttcaaac atgcagtgca aatactagat
301 aggtatgaac aatcactgag cagcgcaaat gaaaactacc aggatttcgc
351 agaaatccag agcataagcg atggagtgga aaaagctgca ttcccacacg
401 tcaataagct gaacgcaata ttgatcaaag gagctacagc gacaggggag
451 gagttctcac aagccacgaa gcatttactc gagatagcac gatacctgaa
501 aaacagaact gagaacatcg agaagggttc gcttaagtcc ttccgcaaca
551 aggtttccca gaaggcgcac attaacccaa cactaatgtg tgacaaccag
601 ctcgacaaga acggaaattt catatggggt gagagaggtt atcacgcaaa
651 gcccttcttt agcaattact tcgagataat tgatccgaag aagggttaca
701 ctcagtacga aacaagaata gtaccaaatg gatcgcgaaa gcttgcaatt
751 ggtaaactca tagtccctac gaattttgaa gtcctaaggg aacagatgag
801 aggtgaaccc gtggaaccgt atccagttac agtggagtgc gtgagcaagt
851 cacaaggtga ttttgtccat gcatgttgct gtgtgacaac agagtcaggt
901 gatccagtcc tatctgaaat caaaatgcca accaaacatc atttggtaat
951 tggcaacagt ggtgatccaa agtacataga tctccctgag attgaagaga
1001 acaagatgta catagcgaag gaaggttatt gctacatcaa tatcttctta
1051 gctatgttgg ttaatgttaa ggagtcgcaa gcaaaggaat tcacgaaagt
1101 tgtgcgagac aaactagtta gcgaacttgg taaatgcccc tctctactag
1151 acgtggcgac tgcctgttat ttcttgaaag tgttctatcc agacgttgct
1201 aacgctgagc taccacgcat gttagtggac cacaagacaa agatgatcca
1251 cgtcgttgat tcgtatgggt cactctcgac tggatatcat gttcttaaga
1301 caaacactgt ggaacaactc atcaagttta caaggtgcaa cttggagtcg
1351 agcttgaaac actaccgcgt tgga