Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus partial gene for polyprotein, genomic RNA, isolate 83-up-2

ACC No: AM501531

Dated: 2007-03-16 | Length: 1149 | CRC: -1123823504

                
ID   AM501531; SV 1; linear; genomic RNA; STD; VRL; 1149 BP.
XX
AC   AM501531;
XX
DT   16-MAR-2007 (Rel. 91, Created)
DT   16-MAR-2007 (Rel. 91, Last updated, Version 1)
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DE   Sugarcane mosaic virus partial gene for polyprotein, genomic RNA, isolate
DE   83-up-2
XX
KW   coat protein; NIb polymerase; polyprotein.
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1149
RA   Kruakhuanpet J.;
RT   ;
RL   Submitted (30-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Kruakhuanpet J., Agricultural Biotechnology, Kasetsart University, Malaiman
RL   Rd, Kamphaeng Sean, Nakhon Pathom, 73140, THAILAND.
XX
RN   [2]
RA   Kruakhuanpet J., Chiemsombat P., Wongsuwan P.;
RT   "Identification of Potyvirus infecting sweet corn in Thailand";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1149
FT                   /organism="Sugarcane mosaic virus"
FT                   /isolate="83-up-2"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /db_xref="taxon:12224"
FT   CDS             <1. .1149
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAM58483.1"
FT                   /translation="RKFYAWLLEMQPFANLAKEGMAPYIAETALRNLYLGTGIKEEEIE
FT                   KYFRQFVKDLPGYVEDYNEEVIHQSGQVDAGRQGSSGAQGGTPPAGSGGTGSGTQGNGG
FT                   QTGSQGSGGQQGSGGGTGQGAAGNNGGGQTGGSSGTAGQRDKDVDAGSAGKISVPKLKA
FT                   MSKKMRLPKAKGKDVLHLDFLLTYKPQQQDKSNTRATKEEFDRWYDAIKKEYEIDDTQM
FT                   TVVMSGLMVWCIENGCSPNINGNWTMMDGDEQRVFPLKPVIENASPTFRQVMHHFSDAA
FT                   EAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEAHMQMKAAAVR
FT                   GSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1. .207
FT                   /product="NIb polymerase"
FT   mat_peptide     208. .1149
FT                   /product="coat protein"
XX
SQ   Sequence 1149 BP; 368 A; 238 C; 310 G; 233 T; 0 other;

am501531 Length: 1149  16-MAR-2007  Type: N  Check: 9676  ..

       1  cggaaatttt atgcgtggct tcttgaaatg caacccttcg cgaacctggc
      51  aaaggaaggt atggcgccat acatagcaga aacagcactc cgcaacctct
     101  accttggaac aggcatcaaa gaagaagaaa ttgaaaaata ttttagacag
     151  tttgtcaagg atcttcctgg atacgtagaa gattacaatg aagaagttat
     201  tcatcaatct ggtcaagttg acgcagggag acagggcagt agcggcgctc
     251  aaggaggcac accaccagca ggaagtggag gcactggatc tggcactcaa
     301  ggcaatgggg gtcagacggg atcccaagga agtggtggtc aacaagggtc
     351  cggtgggggc actggtcaag gagcagctgg aaacaacggc ggaggtcaga
     401  caggaggctc tagtgggaca gctggtcaga gagataagga cgttgacgca
     451  ggctcggctg gaaaaatatc cgtgccaaag cttaaagcca tgtcaaagaa
     501  aatgcgcttg ccaaaggcaa aaggaaaaga cgtcttgcat ttggactttt
     551  tgttgacata caagccacaa cagcaggaca aatcgaacac aagagcaact
     601  aaggaagagt tcgatagatg gtacgacgcc ataaagaagg agtacgagat
     651  cgatgataca caaatgacag tcgtcatgag tggtctgatg gtctggtgca
     701  tcgaaaatgg ttgctcacca aacataaacg ggaattggac gatgatggat
     751  ggggatgaac aaagagtttt cccactaaaa ccagttattg aaaatgcatc
     801  tccaactttt cgacaagtta tgcatcattt cagtgatgca gctgaagcgt
     851  atatagaata cagaaattct actgagcgat acatgccaag atatggactt
     901  cagcgaaatc tcaccgacta tagcttagcg cggtatgctt ttgatttcta
     951  tgaaatgact tcacgcacac cagctagagc taaggaagcc cacatgcaga
    1001  tgaaagccgc agcagttcgt ggttcaaata cacgactgtt cggcttggac
    1051  ggaaatgtcg gcgagactca ggagaataca gagagacaca cagctggcga
    1101  cgttagtcgc aacatgcact ctctgttggg agtgcagcag caccactag