Sequence of DPV Iris yellow spot virus

Iris yellow spot virus n gene for nucleocapsid protein, genomic RNA

ACC No: AM900393

Dated: 2008-08-05 | Length: 822 | CRC: -1848594238

                
ID   AM900393; SV 1; linear; genomic RNA; STD; VRL; 822 BP.
XX
AC   AM900393;
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DT   21-NOV-2007 (Rel. 93, Created)
DT   05-AUG-2008 (Rel. 96, Last updated, Version 2)
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DE   Iris yellow spot virus n gene for nucleocapsid protein, genomic RNA
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KW   n gene; nucleocapsid protein.
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OS   Iris yellow spot virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-822
RA   Glover R.;
RT   ;
RL   Submitted (10-OCT-2007) to the EMBL/GenBank/DDBJ databases.
RL   Glover R., Plant Health, Central Science Laboratory, Sand Hutton, YO41 1LZ,
RL   UNITED KINGDOM.
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RN   [2]
RA   Mumford R.A., Glover R., Daly M., Nixon T., Harju V., Skelton A.;
RT   "Iris yellow spot virus (IYSV) infecting lisianthus (Eustoma grandiflorum)
RT   in the UK: first finding and detection by real-time PCR";
RL   Plant Pathol. 57(4):768-768(2008).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .822
FT                   /organism="Iris yellow spot virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="infected Lisianthus"
FT                   /virion
FT                   /db_xref="taxon:60456"
FT   CDS             complement(1. .822)
FT                   /gene="n"
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:A9J5Y6"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:A9J5Y6"
FT                   /protein_id="CAP12513.1"
FT                   /translation="MSTVRVKPSEIEKLLSGGDVDVVIESDETEGFNFKNFVLANEGVQ
FT                   MTFNNGYTILRNRAGIYKTIKTGKFTFQGKTIVIPSANVSPNQDDWTFRRLEGFIRARM
FT                   LVELIETKDEKEKQKMYEKICGLPLVSAYGLKPSSKFHATTARIMLTLGGPLTLLASLD
FT                   IFAAAALPLAYFQNVKKEALGISRFSTYEQLCKVARVMAAKEFKFTEKYKKIFDETIKI
FT                   LSDCTPGTSGAASLIKFNEQIKILEXAFGKIVEDIGESSKPKTPSKKDRYN"
XX
SQ   Sequence 822 BP; 220 A; 181 C; 144 G; 275 T; 2 other;

am900393 Length: 822  05-AUG-2008  Type: N  Check: 4266  ..

       1  ttaattatat ctatccttct tagagggagt tttgggttta gaagactcac
      51  caatgtcttc aacaatcttt ccaaaagcac yttcaagaat tttaatctgt
     101  tcattgaatt tgatcaatga agcagcaccc gaagttccag gagtgcagtc
     151  actgaggatc ttgatagttt catcaaaaat ctttttgtat ttctctgtga
     201  atttgaattc cttcgctgcc atgactcttg caactttgca gagttgctcg
     251  taagttgaga atctgcttat accgagtgct tcctttttaa cattctggaa
     301  ataagctaat ggaagagcag ctgcagcaaa gatgtcaaga cttgccagca
     351  aagtgagagg accacctagt gtcagcatga tcctagctgt agttgcatga
     401  aacttgctac ttggtttcaa accatatgca cttaccagag gaagcccgca
     451  gattttttca tacattttct gcttctcctt ttcatccttt gtttcaatca
     501  gttctacgag cattctagct ctgataaagc cttccaacct cctgaatgtc
     551  caatcgtctt gattgggact cacattagca ctaggaataa caatggtctt
     601  tccttggaat gtgaatttcc ctgtttttat tgtcttgtaa atgcctgctc
     651  tgttcctaag aattgtgtag ccattattga atgtcatttg gacaccttca
     701  tttgccaaca caaaattctt gaaattgaat ccttcagtct catcagattc
     751  aattaccaca tccacatctc cgccagacag aagtttctcg atttctgacg
     801  gtttcacyct aacggtagac at