Sequence of DPV Hibiscus leaf curl alphasatellite

Nanovirus-like particle rep gene for truncated replication associated protein, clone UK12

ACC No: AM930245

Dated: 2010-01-07 | Length: 1375 | CRC: 617322961

                
ID   AM930245; SV 1; circular; genomic DNA; STD; VRL; 1375 BP.
XX
AC   AM930245;
XX
DT   07-JAN-2010 (Rel. 103, Created)
DT   07-JAN-2010 (Rel. 103, Last updated, Version 1)
XX
DE   Nanovirus-like particle rep gene for truncated replication associated
DE   protein, clone UK12
XX
KW   .
XX
OS   Nanovirus-like particle
OC   Viruses; Satellites; unclassified Satellites;
OC   Begomovirus-associated alphasatellites.
XX
RN   [1]
RP   1-1375
RA   Shahid M.S.;
RT   ;
RL   Submitted (15-DEC-2007) to the EMBL/GenBank/DDBJ databases.
RL   Shahid M.S., Plant Division, Nibge, P.O.Box 577 Jhang Road, Faisalabad,
RL   38000, PAKISTAN.
XX
RN   [2]
RA   Shafiq M.S.;
RT   "Nanovirus-like particle rep gene for truncated replication associated
RT   protein";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1375
FT                   /organism="Nanovirus-like particle"
FT                   /host="Sonchus arvensis"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Faisalabd"
FT                   /isolation_source="host leaf"
FT                   /clone="UK12"
FT                   /db_xref="taxon:96892"
FT   CDS             78. .1025
FT                   /gene="rep"
FT                   /product="replication-associated protein"
FT                   /protein_id="CAP58981.1"
FT                   /translation="MAAIKSNWWCFTVFFLTATAPDLVTLFENTHVSYACWQEEESPTT
FT                   KRRHLQGYLQLKGQRTLNQVKAIFGDLKPHLEKQRARKTDDARDYCMKEETRVSGPFEF
FT                   GEYCPAGSHKRRQRELVIRSPVRMAEENPSVFRRVKAKIAEEEFQKSAPEIQISNLKSW
FT                   QSRLKTLLDRDPDDRTIIWVYGPTGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIG
FT                   CLGNNIVFDIPRDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVAMSNFLPDF
FT                   EKISMDRVHVIPYIPCGVCLKHHSHDIKCDEYLD"
XX
SQ   Sequence 1375 BP; 424 A; 242 C; 318 G; 391 T; 0 other;

am930245 Length: 1375  07-JAN-2010  Type: N  Check: 5709  ..

       1  accccgcctc gagaccccga gttagagacc ctccgtacag ttgttcttcg
      51  tctcttatat tattatttct gcgatatatg gctgcaatta agtcaaattg
     101  gtggtgtttc acggtcttct tcctcaccgc taccgcacct gacttggtta
     151  ctttgttcga gaacactcac gtgagttatg cctgctggca agaagaggag
     201  tctccgacga cgaaacgtcg ccacctgcaa ggctatctgc aattgaaggg
     251  tcagaggacc ctgaaccagg tgaaggccat atttggggat ttgaagcccc
     301  atcttgagaa acagcgagct cgtaaaacag acgatgctcg cgactattgt
     351  atgaaagagg aaactagggt ttccggcccc tttgaatttg gggaatactg
     401  tcctgctggt tctcacaaac gccgacaaag ggaactcgta attcgatctc
     451  cggtgagaat ggcagaggaa aatccgtccg tattccgacg agtcaaggca
     501  aagattgctg aggaagaatt ccagaagagc gctcctgaga ttcaaatttc
     551  aaatttgaaa tcttggcaat cgcgcctgaa gacgctcctt gacagggacc
     601  cagatgaccg cactatcatc tgggtatatg gacccactgg tggggaagga
     651  aaatccacct ttgccaggga cctgtacaga agtgggtcat ggttctatac
     701  acgtggagga tctgcagata atgtagctta ccagtacata ggatgtttag
     751  gaaataatat tgtatttgat attcctcgtg ataagaagga ttatctacaa
     801  tatagtttaa tagagatgtt taaggatagg ttaatagtta gtaataagta
     851  cgagcctctt atggccccat taattaattg tattcatgtt gtagctatgt
     901  ctaattttct ccctgatttt gagaagatta gtatggatag ggtccatgta
     951  attccttata ttccttgtgg tgtttgtctt aagcatcaca gtcatgatat
    1001  taaatgtgat gaatatttgg attaattttg tttctttaaa aaaagaaaga
    1051  atgaaatgaa aaaaaaaaga agtactgaat catattttat tattattaag
    1101  aaaaataggg ccccgcaggg gcatctgtta aaaaatattt tgtttctttt
    1151  aaaaaagaaa gaatgaaatg aaaaaaaaat tatataaaaa taaaaaatat
    1201  cagggtttat aatgtgggcc atactaagtg cgctagatga gagagaaaat
    1251  gcaattgggc actgtagcaa cacggaggga ctaaagttgt aaatatggaa
    1301  tgtttgggga ctgttgtgta aatatctttg ggtacccagg ctataaataa
    1351  cacgtcacga ggcgggtgta gtatt