Sequence of DPV Soil-borne wheat mosaic virus

Soil-borne wheat mosaic virus segment RNA2 coat protein gene, complete cds.

ACC No: AY016008

Dated: 2003-05-29 | Length: 1238 | CRC: -1271675947

                !!NA_SEQUENCE 1.0
ID   AY016008   standard; genomic RNA; VRL; 1238 BP.
XX
AC   AY016008;
XX
SV   AY016008.1
XX
DT   02-JAN-2002 (Rel. 70, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 3)
XX
DE   Soil-borne wheat mosaic virus segment RNA2 coat protein gene, complete cds.
XX
KW   .
XX
OS   Soil-borne wheat mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN   [1]
RP   1-1238
RX   MEDLINE; 21954635.
RX   PUBMED; 11958460.
RA   Koenig R., Bergstrom G.C., Gray S.M., Loss S.;
RT   "A New York isolate of Soil-borne wheat mosaic virus differs considerably
RT   from the Nebraska type strain in the nucleotide sequences of various coding
RT   regions but not in the deduced amino acid sequences";
RL   Arch. Virol. 147(3):617-625(2002).
XX
RN   [2]
RP   1-1238
RA   Koenig R.;
RT   ;
RL   Submitted (08-DEC-2000) to the EMBL/GenBank/DDBJ databases.
RL   Institut fuer Pflanzenvirologie, Mikrobiologie und Biologische Sicherheit,
RL   Biologische Bundesanstalt fuer Land und Forstwirtschaft, Messeweg 11,
RL   Braunschweig D38104, Germany
XX
DR   GOA; Q06388.
DR   SPTREMBL; Q06388; Q06388.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1238
FT                   /country="USA:New York"
FT                   /db_xref="taxon:28375"
FT                   /mol_type="genomic RNA"
FT                   /organism="Soil-borne wheat mosaic virus"
FT                   /strain="New York"
FT                   /segment="RNA2"
FT   CDS             153. .683
FT                   /codon_start=1
FT                   /db_xref="GOA:Q06388"
FT                   /db_xref="SPTREMBL:Q06388"
FT                   /product="coat protein"
FT                   /protein_id="AAK08626.1"
FT                   /translation="MAVNKGYTGYNKELNAMAATHAYIRLSTLMSQIESWQATRASVLT
FT                   HLGVMLNGVSKLGERSFFSRTKRFGAHTSDGDEIFCDLGGEAVTQILSRLTVALQSARG
FT                   EGAQTRNAKRGAAPGTSQVENEEQGQTDQTLAISNAVAELMIFVRTKDFTMNECYTQDS
FT                   FEAKYNLKWEGSS"
XX
SQ   Sequence 1238 BP; 327 A; 248 C; 333 G; 330 T; 0 other;

AY016008  Length: 1238  September 11, 2003 13:48  Type: N  Check: 5969  ..

       1  actagtcgtg tctttcaagt ggtatcggtg cgctggataa gtttgctaaa
      51  ctcaaggacc aggtggacct atcgctgcag agggcagctg gaaaagtgac
     101  tactgaatca actgggccat tactaccaag ggttactaca accttaccag
     151  ttatggcggt taacaaaggt tacactggtt acaataaaga gctcaatgcg
     201  atggctgcaa ctcatgctta cataagactc agtactttga tgagtcagat
     251  tgagagttgg caggcgacga gggcgagtgt gctcacacat ctaggcgtta
     301  tgcttaacgg tgtgagtaag ctaggtgaga gaagtttctt ctctaggact
     351  aaacgttttg gagctcacac ttcggacggt gacgagattt tctgcgatct
     401  gggcggtgaa gcggttacgc agatcctttc cagactgaca gtcgcactac
     451  aatccgcgag aggtgaaggt gcccaaacca ggaatgctaa gagaggagct
     501  gcacctggta cgagccaagt cgaaaatgaa gagcaaggtc agaccgatca
     551  gaccttggct atttctaatg ctgtggctga gttgatgata tttgtgcgta
     601  cgaaagattt tactatgaat gagtgctaca ctcaggattc tttcgaagca
     651  aaatataact tgaaatggga gggctcgagc tgacgggacg gcgtctcggg
     701  gaaattgaga gcacaaatcg ttgaagaatt tcagaatcga ctcataattg
     751  ctgacgattt gggcatcttt ccgagacgcg acgttgatgg tgttatcatt
     801  cgtaatgaac ctgaggtggt ctattcggag ctagaagaca agttactgag
     851  tttcgaaagt tccgtctatc atccaaaagc ggttactgtt gagtttgaag
     901  ttccagttgc tactggagct acgactactg atgatgagat tactactgaa
     951  gatgtggaaa tggtgatagt cactgaagtg ctcgtcgacg acgaatctga
    1001  ttactattgg ctgtacttcg tactgctgct cacatctttc ctcataacgt
    1051  gtttcattct cctttcaagg agattcatcc gttttcttgg taaccgtgga
    1101  ggtcctggtg cacctttgtg cagacgtctt gccacaaggt tgtggtctgt
    1151  caggctgtgg ttgctaagga aagctactag gaggtacggc aatttgggcg
    1201  tggtgcgaaa aactcactca caaaccacga tgcgtaaa