Sequence of DPV Pelargonium chlorotic ring pattern virus
Pelargonium chlorotic ring pattern virus isolate GR57, complete genome.
ACC No: AY038069
Dated: 2004-07-09 | Length: 3904 | CRC: 770644239
!!NA_SEQUENCE 1.0 ID AY038069 standard; genomic RNA; VRL; 3904 BP. XX AC AY038069; XX SV AY038069.2 XX DT 31-JUL-2001 (Rel. 68, Created) DT 09-JUL-2004 (Rel. 80, Last updated, Version 2) XX DE Pelargonium chlorotic ring pattern virus isolate GR57, complete genome. XX KW . XX OS Pelargonium chlorotic ring pattern virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae. XX RN [1] RP 1-3904 RA Kinard G., Guaragna M.A., Jordan R.; RT "Characterization and genome organization of four unique viruses infecting RT geranium and their assignment to a new provisional genus in the RT Tombusviridae family (#VP64.13)"; RL (in) Unknown A. (eds.); RL XITH INTERNATIONAL CONGRESS OF VIROLOGY:415-0; RL Unknown Publisher (1999) XX RN [2] RP 1-3904 RA Kinard G., Jordan R.; RT "Genome organization of Pelargonium chlorotic ring pattern virus: further RT implications for tombusviridae taxonomy"; RL Acta Hortic. 568:17-27(2002). XX RN [3] RP 1-3904 RA Jordan R.; RT ; RL Submitted (05-JAN-2001) to the EMBL/GenBank/DDBJ databases. RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum, RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA XX RN [4] RC Sequence update by submitter RP 1-3904 RA Jordan R.; RT ; RL Submitted (08-JUL-2004) to the EMBL/GenBank/DDBJ databases. RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum, RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA XX CC On Jul 8, 2004 this sequence version replaced gi:15010538. XX FH Key Location/Qualifiers FH FT source 1. .3904 FT /db_xref="taxon:167021" FT /mol_type="genomic RNA" FT /virion FT /organism="Pelargonium chlorotic ring pattern virus" FT /isolate="GR57" FT 5'UTR 1. .16 FT gene 17. .2308 FT /gene="RdRp" FT CDS 17. .2308 FT /codon_start=1 FT /note="p87; putative readthrough protein of p27 ORF" FT /transl_except=(pos:734. .736,aa:OTHER) FT /gene="RdRp" FT /product="87 kDa replicase protein" FT /protein_id="AAT69549.1" FT /translation="MFRSLVTAARVGGALAVFAKDLAVLPAEVGVFATRLIITRTIEVI FT PEYLHMIAPGASRIPKSVLTGQAFTSYDVEYNGTSDLENSCEVATEDVIEVEGKTTKVV FT KTRRARNKLQFSALLAIAAKNHFGGIVRPTRANELSVMKFLTSKCNDHKLTIAQTRSVC FT CAAFPLVFSPDEGDKLIFATLNSEEAFERRQDYSEAQGVGNCWLNLLSNPCSRRRWRRV FT VLRCFGMPVQEAFQFAKXGCLMQTCGVDTKVFRGEHHWVKEAHEASYIPPRRLFSISGL FT GPTIDWGVHNCSYVNLRRGLMERVYFVERKGKLEPCPRPAEGEFARLFKKYGHRVVGLC FT GSHSKISREEFVGSYQGRKRTIYTNAMTSLLDKPLELRDSFLSTFVKCEKLNFSKKPDP FT APRVIQPRDPRYNVELGCYLKRFEHSAYRALDKLWGGPTVMKGYTVQEIGKIIESKWNE FT YRRPVAIGFDMSRFDQHVSVDALKFEHKIYKRVFRGDQNLARLLDWQLENRGTAYAKDG FT WLKYKVNGKRMSGDMNTALGNCILACVITKSIMDGAGVKCSLINNGDDCVVFCEDGQCR FT AVEDSLTGGWLKFGFTCIAEKPVKVLEKVEFCQMQPVLTVGGYTMVRNPKISLSKDCHS FT TTPFDSIKLAREWSYSVGLGGRSLTVGVPVVHDFYQCLERNGKQHNNERKMRLFYGDYY FT GKWVAMHKGGNHFVTEEARHSFHLAFDISPDQQEAMEEFYQNKELCWEFSPFSKVHNDI FT EWTLAHPVPI" FT CDS 17. .736 FT /codon_start=1 FT /note="p27; shares amino terminus with p87 ORF" FT /gene="RdRp" FT /product="27 kDa putative replicase protein" FT /protein_id="AAT69550.1" FT /translation="MFRSLVTAARVGGALAVFAKDLAVLPAEVGVFATRLIITRTIEVI FT PEYLHMIAPGASRIPKSVLTGQAFTSYDVEYNGTSDLENSCEVATEDVIEVEGKTTKVV FT KTRRARNKLQFSALLAIAAKNHFGGIVRPTRANELSVMKFLTSKCNDHKLTIAQTRSVC FT CAAFPLVFSPDEGDKLIFATLNSEEAFERRQDYSEAQGVGNCWLNLLSNPCSRRRWRRV FT VLRCFGMPVQEAFQFAK" FT gene 2278. .2611 FT /gene="p7-FS" FT CDS join(2278. .2456,2458. .2611) FT /codon_start=1 FT /note="p13; shares amino terminus with p7 movement protein FT via a putative -1 frameshift; ribosomal slippage" FT /gene="p7-FS" FT /product="putative 13 kDa movement protein" FT /protein_id="AAT69551.1" FT /translation="MDPSPPSADITSTQQNQKRGKAKNRLDVAHSGVSKASNSDLVGAN FT FITVAETVNFTVHLNFDWGLASPNLLLFITFNFFLVSVFSVGDRYSYYYQANSTADKFI FT SVAVGK" FT gene 2278. .2463 FT /gene="p7" FT CDS 2278. .2463 FT /codon_start=1 FT /gene="p7" FT /product="putative 7 kDa movement protein" FT /protein_id="AAT69552.1" FT /translation="MDPSPPSADITSTQQNQKRGKAKNRLDVAHSGVSKASNSDLVGAN FT FITVAETVNFTVHLNF" FT gene 2608. .3621 FT /gene="CP" FT CDS 2608. .3621 FT /codon_start=1 FT /db_xref="GOA:Q911J4" FT /db_xref="UniProt/TrEMBL:Q911J4" FT /gene="CP" FT /product="putative coat protein" FT /protein_id="AAK74064.1" FT /translation="MTASDSPITSKFAAQGAQWAIKLQTKGWRNLSKAQKREARSHGIG FT PSAPPPAIPKVNRVIMGNPNNSRRRGGGDGNAQKSMTITKQEFLGTIFSSDSITTYPID FT PRNVKTFPQISALALGYNKYKITSLQLRYSTRVTETEANVIMAFTTDSGDLPPRSKVDM FT YNIGTKFEVLASKPLVATIPVSKDTKYLRDKCSDDSKLVDCGALHFMVDGRHSGRLGEL FT FLQVTIVLSEPTFSQQSTQILRGTTQTGPTLVEFSQSGKSSTYKFLAVGRYVFSAYGKV FT LVKARQVGMDKAKQMHTSDDKSSNVIAEVEALEPGASIVLDYVEEEPPSFVCISRM" FT CDS 3242. .3412 FT /codon_start=1 FT /note="putative p6 nested within 37 kDa capsidprotein ORF" FT /gene="CP" FT /product="6 kDa unknown protein" FT /protein_id="AAT69553.1" FT /translation="MGGTPEDSENCSSRSPSCFPNPLSPNKALRFSGVRRKPAPLLWNF FT PRVASPALTSS" FT 3'UTR 3622. .3904 XX SQ Sequence 3904 BP; 1030 A; 900 C; 1055 G; 919 T; 0 other; AY038069 Length: 3904 July 13, 2004 08:23 Type: N Check: 3783 .. 1 aaaagtaact ctcacgatgt ttagatcact agttactgca gctcgagtag 51 gcggagcact tgccgtgttt gcgaaggact tggcggtcct tccagcagaa 101 gtgggggtgt ttgccactcg actcatcatc accagaacca tcgaagttat 151 tccagagtac ttacatatga ttgcgccagg agcgtcgcga attcccaaat 201 cagtccttac aggacaggcg ttcaccagtt acgatgtgga gtacaatggc 251 acgagcgacc tcgaaaacag ttgcgaggtt gccactgaag acgtgattga 301 ggtagagggc aagaccacca aggtcgtgaa gaccagaagg gcgcgaaaca 351 agttgcaatt ctccgccctg ctggctatcg cggcaaagaa ccattttggt 401 ggtattgtac gccccacccg agccaatgag ctgtctgtca tgaagttttt 451 gacttctaag tgcaacgacc acaaactaac catcgctcag acccggtctg 501 tttgttgcgc tgcatttcct ctcgttttct ctcctgacga aggcgataag 551 ttgatctttg ccaccctcaa tagcgaggag gcattcgaga ggagacagga 601 ctactcagag gcccaggggg taggcaactg ctggttgaac ttactatcga 651 acccatgcag ccgtaggaga tggcgcaggg tagtgttgag atgctttggg 701 atgcctgtcc aagaggcatt ccaatttgcg aaataggggt gcctcatgca 751 gacctgtggt gtggacacta aagtgttcag gggtgaacac cactgggtaa 801 aggaagcgca cgaggcatcc tatattcccc cgcgtagatt gtttagtata 851 tcaggtttag gtcccaccat agactggggg gtccacaact gtagctatgt 901 gaacctgcgc cgcgggttaa tggagcgagt ttactttgtg gaacgcaagg 951 gtaagcttga gccatgcccc cgaccggcgg agggagagtt cgctagactt 1001 ttcaagaagt atggccaccg tgtggtggga ttgtgtggaa gtcattccaa 1051 gatctcccgc gaagaatttg tgggatcgta tcaaggcagg aagcgcacga 1101 tctacactaa cgcgatgacc agccttcttg ataagcctct tgagctccgt 1151 gattcgtttt tgagtacgtt tgtaaagtgt gagaagttga actttagcaa 1201 gaagccagac ccagcgccta gagtcataca gcccagggat ccgcgttaca 1251 acgttgaact gggatgttat ttgaagcggt ttgagcactc tgcgtatcgc 1301 gcattggaca aattgtgggg gggacccacc gtgatgaaag gatacactgt 1351 ccaggagatt ggtaaaatca ttgagagcaa gtggaatgag taccggaggc 1401 ctgtggcgat cggtttcgac atgagtcgat tcgaccagca tgtttccgtg 1451 gatgccttga agttcgagca caagatctac aaacgggttt ttaggggtga 1501 ccagaatttg gctcgccttt tggattggca gctcgagaat cggggcacgg 1551 cttacgcaaa ggacggatgg ctgaagtaca aagtgaatgg gaaacggatg 1601 agtggagaca tgaacacggc cttagggaac tgcatcctgg cgtgtgtcat 1651 aaccaagagc attatggatg gggctggagt gaagtgctct ctgatcaaca 1701 atggggatga ttgtgtggtg ttctgtgaag atgggcaatg ccgcgctgtc 1751 gaggatagct tgacaggggg gtggcttaag ttcggattta catgcattgc 1801 cgagaaacct gtgaaagtgt tagagaaagt cgaattttgc caaatgcagc 1851 ctgtgctcac ggtcggtggc tacaccatgg taaggaaccc gaagataagt 1901 ttatcgaagg actgtcattc aactacaccg tttgacagca tcaagttggc 1951 tcgtgagtgg agctattccg tcgggttggg tggccgtagc ttaacggtcg 2001 gcgtcccagt tgtacatgat ttttaccaat gtttggaacg aaacgggaaa 2051 caacacaaca atgaaaggaa aatgcgactt ttttatgggg attattatgg 2101 aaagtgggtt gcaatgcaca aaggtggtaa tcactttgtg acggaggagg 2151 ctagacacag cttccatctc gcctttgaca tcagccccga tcaacaggaa 2201 gccatggaag agttctacca gaacaaggag ttgtgttggg agttctcccc 2251 attcagtaaa gtgcataacg atattgaatg gaccctagcc cacccagtgc 2301 cgatataaca tcaacgcagc aaaatcaaaa gagaggtaaa gccaagaata 2351 gactagacgt tgcccacagt ggagtcagca aagcatctaa cagcgatctc 2401 gttggtgcta atttcattac tgtggctgaa actgtcaact tcacggtgca 2451 ccttaacttt tgattgggga ttggcatctc ctaatttgct gcttttcata 2501 acgttcaatt tcttcttagt tagtgtgttt agtgttggcg atcgctattc 2551 gtactactac caggcaaaca gtaccgcaga caagttcatc tccgtcgcag 2601 taggaaaatg actgcctccg acagcccgat cacatcgaaa tttgcagccc 2651 agggagccca gtgggcgatc aagcttcaaa cgaaagggtg gcgcaatctc 2701 agcaaagccc agaagagaga agcgaggtcg cacggcattg ggccttcagc 2751 tcccccaccc gccataccaa aagtcaacag ggttatcatg ggtaacccta 2801 ataatagcag acggcgagga ggtggtgacg gtaatgctca gaagagcatg 2851 acgatcacca aacaggagtt ccttgggacc atattcagct cggacagcat 2901 tactacctat ccaattgatc cccgaaacgt caagaccttc ccccagatca 2951 gcgccttagc tttgggttac aataagtaca agataacctc gctccagctc 3001 cgatactcaa ctagggtcac tgaaaccgag gccaacgtta ttatggcttt 3051 cacaacggat tctggtgacc ttcctccgag gagcaaggtg gacatgtaca 3101 acattggcac gaagtttgag gtgctggcgt ctaagccact agtggccaca 3151 atccccgtct ccaaagacac gaaatatctg agagacaagt gttccgacga 3201 ttcaaagttg gtagactgtg gtgccctcca ctttatggtg gatgggaggc 3251 actccggaag actcggagaa ttgttcctcc aggtcaccat cgtgctttcc 3301 gaacccactt tctcccaaca aagcactcag attctccggg gtacgacgca 3351 aaccggcccc actcttgtgg aattttccca gagtggcaag tccagcactt 3401 acaagttcct agccgtcgga cgctatgtct ttagcgccta tggtaaggtc 3451 ttggtcaagg ctaggcaggt cggcatggat aaggcaaaac agatgcacac 3501 cagcgacgac aaaagcagca acgtcatagc cgaggtggaa gccttagagc 3551 cgggcgccag tatagtatta gactatgtcg aggaggagcc tccttctttt 3601 gtttgtattt cccgtatgta attatttgta tatgttatgt ataattataa 3651 tcatgcaatg gcacatgtag ttcccctaac ctctcagtag gagtcaagcc 3701 ctgatgcgcc aacatccaga agggggtaaa gctgagtcgg tgcaaggaac 3751 cttgttagcc ctaagaaaaa cccaaaaaca gagtgcatag tttagctttt 3801 gtgttgtagg agccagagac caaagatcca gacaactggt gagggcggtc 3851 gatggtgcga agtaaattag aaaggggggc gtttacccac gtcctccctt 3901 gccc