Sequence of DPV Pelargonium chlorotic ring pattern virus
Pelargonium chlorotic ring pattern virus isolate GR57, complete genome.
ACC No: AY038069
Dated: 2004-07-09 | Length: 3904 | CRC: 770644239
!!NA_SEQUENCE 1.0
ID AY038069 standard; genomic RNA; VRL; 3904 BP.
XX
AC AY038069;
XX
SV AY038069.2
XX
DT 31-JUL-2001 (Rel. 68, Created)
DT 09-JUL-2004 (Rel. 80, Last updated, Version 2)
XX
DE Pelargonium chlorotic ring pattern virus isolate GR57, complete genome.
XX
KW .
XX
OS Pelargonium chlorotic ring pattern virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae.
XX
RN [1]
RP 1-3904
RA Kinard G., Guaragna M.A., Jordan R.;
RT "Characterization and genome organization of four unique viruses infecting
RT geranium and their assignment to a new provisional genus in the
RT Tombusviridae family (#VP64.13)";
RL (in) Unknown A. (eds.);
RL XITH INTERNATIONAL CONGRESS OF VIROLOGY:415-0;
RL Unknown Publisher (1999)
XX
RN [2]
RP 1-3904
RA Kinard G., Jordan R.;
RT "Genome organization of Pelargonium chlorotic ring pattern virus: further
RT implications for tombusviridae taxonomy";
RL Acta Hortic. 568:17-27(2002).
XX
RN [3]
RP 1-3904
RA Jordan R.;
RT ;
RL Submitted (05-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum,
RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA
XX
RN [4]
RC Sequence update by submitter
RP 1-3904
RA Jordan R.;
RT ;
RL Submitted (08-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL Floral & Nursery Plants Research Unit, USDA, ARS, US National Arboretum,
RL 10300 Baltimore Ave, Bldg 010A, Room 238, Beltsville, MD 20705, USA
XX
CC On Jul 8, 2004 this sequence version replaced gi:15010538.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3904
FT /db_xref="taxon:167021"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Pelargonium chlorotic ring pattern virus"
FT /isolate="GR57"
FT 5'UTR 1. .16
FT gene 17. .2308
FT /gene="RdRp"
FT CDS 17. .2308
FT /codon_start=1
FT /note="p87; putative readthrough protein of p27 ORF"
FT /transl_except=(pos:734. .736,aa:OTHER)
FT /gene="RdRp"
FT /product="87 kDa replicase protein"
FT /protein_id="AAT69549.1"
FT /translation="MFRSLVTAARVGGALAVFAKDLAVLPAEVGVFATRLIITRTIEVI
FT PEYLHMIAPGASRIPKSVLTGQAFTSYDVEYNGTSDLENSCEVATEDVIEVEGKTTKVV
FT KTRRARNKLQFSALLAIAAKNHFGGIVRPTRANELSVMKFLTSKCNDHKLTIAQTRSVC
FT CAAFPLVFSPDEGDKLIFATLNSEEAFERRQDYSEAQGVGNCWLNLLSNPCSRRRWRRV
FT VLRCFGMPVQEAFQFAKXGCLMQTCGVDTKVFRGEHHWVKEAHEASYIPPRRLFSISGL
FT GPTIDWGVHNCSYVNLRRGLMERVYFVERKGKLEPCPRPAEGEFARLFKKYGHRVVGLC
FT GSHSKISREEFVGSYQGRKRTIYTNAMTSLLDKPLELRDSFLSTFVKCEKLNFSKKPDP
FT APRVIQPRDPRYNVELGCYLKRFEHSAYRALDKLWGGPTVMKGYTVQEIGKIIESKWNE
FT YRRPVAIGFDMSRFDQHVSVDALKFEHKIYKRVFRGDQNLARLLDWQLENRGTAYAKDG
FT WLKYKVNGKRMSGDMNTALGNCILACVITKSIMDGAGVKCSLINNGDDCVVFCEDGQCR
FT AVEDSLTGGWLKFGFTCIAEKPVKVLEKVEFCQMQPVLTVGGYTMVRNPKISLSKDCHS
FT TTPFDSIKLAREWSYSVGLGGRSLTVGVPVVHDFYQCLERNGKQHNNERKMRLFYGDYY
FT GKWVAMHKGGNHFVTEEARHSFHLAFDISPDQQEAMEEFYQNKELCWEFSPFSKVHNDI
FT EWTLAHPVPI"
FT CDS 17. .736
FT /codon_start=1
FT /note="p27; shares amino terminus with p87 ORF"
FT /gene="RdRp"
FT /product="27 kDa putative replicase protein"
FT /protein_id="AAT69550.1"
FT /translation="MFRSLVTAARVGGALAVFAKDLAVLPAEVGVFATRLIITRTIEVI
FT PEYLHMIAPGASRIPKSVLTGQAFTSYDVEYNGTSDLENSCEVATEDVIEVEGKTTKVV
FT KTRRARNKLQFSALLAIAAKNHFGGIVRPTRANELSVMKFLTSKCNDHKLTIAQTRSVC
FT CAAFPLVFSPDEGDKLIFATLNSEEAFERRQDYSEAQGVGNCWLNLLSNPCSRRRWRRV
FT VLRCFGMPVQEAFQFAK"
FT gene 2278. .2611
FT /gene="p7-FS"
FT CDS join(2278. .2456,2458. .2611)
FT /codon_start=1
FT /note="p13; shares amino terminus with p7 movement protein
FT via a putative -1 frameshift; ribosomal slippage"
FT /gene="p7-FS"
FT /product="putative 13 kDa movement protein"
FT /protein_id="AAT69551.1"
FT /translation="MDPSPPSADITSTQQNQKRGKAKNRLDVAHSGVSKASNSDLVGAN
FT FITVAETVNFTVHLNFDWGLASPNLLLFITFNFFLVSVFSVGDRYSYYYQANSTADKFI
FT SVAVGK"
FT gene 2278. .2463
FT /gene="p7"
FT CDS 2278. .2463
FT /codon_start=1
FT /gene="p7"
FT /product="putative 7 kDa movement protein"
FT /protein_id="AAT69552.1"
FT /translation="MDPSPPSADITSTQQNQKRGKAKNRLDVAHSGVSKASNSDLVGAN
FT FITVAETVNFTVHLNF"
FT gene 2608. .3621
FT /gene="CP"
FT CDS 2608. .3621
FT /codon_start=1
FT /db_xref="GOA:Q911J4"
FT /db_xref="UniProt/TrEMBL:Q911J4"
FT /gene="CP"
FT /product="putative coat protein"
FT /protein_id="AAK74064.1"
FT /translation="MTASDSPITSKFAAQGAQWAIKLQTKGWRNLSKAQKREARSHGIG
FT PSAPPPAIPKVNRVIMGNPNNSRRRGGGDGNAQKSMTITKQEFLGTIFSSDSITTYPID
FT PRNVKTFPQISALALGYNKYKITSLQLRYSTRVTETEANVIMAFTTDSGDLPPRSKVDM
FT YNIGTKFEVLASKPLVATIPVSKDTKYLRDKCSDDSKLVDCGALHFMVDGRHSGRLGEL
FT FLQVTIVLSEPTFSQQSTQILRGTTQTGPTLVEFSQSGKSSTYKFLAVGRYVFSAYGKV
FT LVKARQVGMDKAKQMHTSDDKSSNVIAEVEALEPGASIVLDYVEEEPPSFVCISRM"
FT CDS 3242. .3412
FT /codon_start=1
FT /note="putative p6 nested within 37 kDa capsidprotein ORF"
FT /gene="CP"
FT /product="6 kDa unknown protein"
FT /protein_id="AAT69553.1"
FT /translation="MGGTPEDSENCSSRSPSCFPNPLSPNKALRFSGVRRKPAPLLWNF
FT PRVASPALTSS"
FT 3'UTR 3622. .3904
XX
SQ Sequence 3904 BP; 1030 A; 900 C; 1055 G; 919 T; 0 other;
AY038069 Length: 3904 July 13, 2004 08:23 Type: N Check: 3783 ..
1 aaaagtaact ctcacgatgt ttagatcact agttactgca gctcgagtag
51 gcggagcact tgccgtgttt gcgaaggact tggcggtcct tccagcagaa
101 gtgggggtgt ttgccactcg actcatcatc accagaacca tcgaagttat
151 tccagagtac ttacatatga ttgcgccagg agcgtcgcga attcccaaat
201 cagtccttac aggacaggcg ttcaccagtt acgatgtgga gtacaatggc
251 acgagcgacc tcgaaaacag ttgcgaggtt gccactgaag acgtgattga
301 ggtagagggc aagaccacca aggtcgtgaa gaccagaagg gcgcgaaaca
351 agttgcaatt ctccgccctg ctggctatcg cggcaaagaa ccattttggt
401 ggtattgtac gccccacccg agccaatgag ctgtctgtca tgaagttttt
451 gacttctaag tgcaacgacc acaaactaac catcgctcag acccggtctg
501 tttgttgcgc tgcatttcct ctcgttttct ctcctgacga aggcgataag
551 ttgatctttg ccaccctcaa tagcgaggag gcattcgaga ggagacagga
601 ctactcagag gcccaggggg taggcaactg ctggttgaac ttactatcga
651 acccatgcag ccgtaggaga tggcgcaggg tagtgttgag atgctttggg
701 atgcctgtcc aagaggcatt ccaatttgcg aaataggggt gcctcatgca
751 gacctgtggt gtggacacta aagtgttcag gggtgaacac cactgggtaa
801 aggaagcgca cgaggcatcc tatattcccc cgcgtagatt gtttagtata
851 tcaggtttag gtcccaccat agactggggg gtccacaact gtagctatgt
901 gaacctgcgc cgcgggttaa tggagcgagt ttactttgtg gaacgcaagg
951 gtaagcttga gccatgcccc cgaccggcgg agggagagtt cgctagactt
1001 ttcaagaagt atggccaccg tgtggtggga ttgtgtggaa gtcattccaa
1051 gatctcccgc gaagaatttg tgggatcgta tcaaggcagg aagcgcacga
1101 tctacactaa cgcgatgacc agccttcttg ataagcctct tgagctccgt
1151 gattcgtttt tgagtacgtt tgtaaagtgt gagaagttga actttagcaa
1201 gaagccagac ccagcgccta gagtcataca gcccagggat ccgcgttaca
1251 acgttgaact gggatgttat ttgaagcggt ttgagcactc tgcgtatcgc
1301 gcattggaca aattgtgggg gggacccacc gtgatgaaag gatacactgt
1351 ccaggagatt ggtaaaatca ttgagagcaa gtggaatgag taccggaggc
1401 ctgtggcgat cggtttcgac atgagtcgat tcgaccagca tgtttccgtg
1451 gatgccttga agttcgagca caagatctac aaacgggttt ttaggggtga
1501 ccagaatttg gctcgccttt tggattggca gctcgagaat cggggcacgg
1551 cttacgcaaa ggacggatgg ctgaagtaca aagtgaatgg gaaacggatg
1601 agtggagaca tgaacacggc cttagggaac tgcatcctgg cgtgtgtcat
1651 aaccaagagc attatggatg gggctggagt gaagtgctct ctgatcaaca
1701 atggggatga ttgtgtggtg ttctgtgaag atgggcaatg ccgcgctgtc
1751 gaggatagct tgacaggggg gtggcttaag ttcggattta catgcattgc
1801 cgagaaacct gtgaaagtgt tagagaaagt cgaattttgc caaatgcagc
1851 ctgtgctcac ggtcggtggc tacaccatgg taaggaaccc gaagataagt
1901 ttatcgaagg actgtcattc aactacaccg tttgacagca tcaagttggc
1951 tcgtgagtgg agctattccg tcgggttggg tggccgtagc ttaacggtcg
2001 gcgtcccagt tgtacatgat ttttaccaat gtttggaacg aaacgggaaa
2051 caacacaaca atgaaaggaa aatgcgactt ttttatgggg attattatgg
2101 aaagtgggtt gcaatgcaca aaggtggtaa tcactttgtg acggaggagg
2151 ctagacacag cttccatctc gcctttgaca tcagccccga tcaacaggaa
2201 gccatggaag agttctacca gaacaaggag ttgtgttggg agttctcccc
2251 attcagtaaa gtgcataacg atattgaatg gaccctagcc cacccagtgc
2301 cgatataaca tcaacgcagc aaaatcaaaa gagaggtaaa gccaagaata
2351 gactagacgt tgcccacagt ggagtcagca aagcatctaa cagcgatctc
2401 gttggtgcta atttcattac tgtggctgaa actgtcaact tcacggtgca
2451 ccttaacttt tgattgggga ttggcatctc ctaatttgct gcttttcata
2501 acgttcaatt tcttcttagt tagtgtgttt agtgttggcg atcgctattc
2551 gtactactac caggcaaaca gtaccgcaga caagttcatc tccgtcgcag
2601 taggaaaatg actgcctccg acagcccgat cacatcgaaa tttgcagccc
2651 agggagccca gtgggcgatc aagcttcaaa cgaaagggtg gcgcaatctc
2701 agcaaagccc agaagagaga agcgaggtcg cacggcattg ggccttcagc
2751 tcccccaccc gccataccaa aagtcaacag ggttatcatg ggtaacccta
2801 ataatagcag acggcgagga ggtggtgacg gtaatgctca gaagagcatg
2851 acgatcacca aacaggagtt ccttgggacc atattcagct cggacagcat
2901 tactacctat ccaattgatc cccgaaacgt caagaccttc ccccagatca
2951 gcgccttagc tttgggttac aataagtaca agataacctc gctccagctc
3001 cgatactcaa ctagggtcac tgaaaccgag gccaacgtta ttatggcttt
3051 cacaacggat tctggtgacc ttcctccgag gagcaaggtg gacatgtaca
3101 acattggcac gaagtttgag gtgctggcgt ctaagccact agtggccaca
3151 atccccgtct ccaaagacac gaaatatctg agagacaagt gttccgacga
3201 ttcaaagttg gtagactgtg gtgccctcca ctttatggtg gatgggaggc
3251 actccggaag actcggagaa ttgttcctcc aggtcaccat cgtgctttcc
3301 gaacccactt tctcccaaca aagcactcag attctccggg gtacgacgca
3351 aaccggcccc actcttgtgg aattttccca gagtggcaag tccagcactt
3401 acaagttcct agccgtcgga cgctatgtct ttagcgccta tggtaaggtc
3451 ttggtcaagg ctaggcaggt cggcatggat aaggcaaaac agatgcacac
3501 cagcgacgac aaaagcagca acgtcatagc cgaggtggaa gccttagagc
3551 cgggcgccag tatagtatta gactatgtcg aggaggagcc tccttctttt
3601 gtttgtattt cccgtatgta attatttgta tatgttatgt ataattataa
3651 tcatgcaatg gcacatgtag ttcccctaac ctctcagtag gagtcaagcc
3701 ctgatgcgcc aacatccaga agggggtaaa gctgagtcgg tgcaaggaac
3751 cttgttagcc ctaagaaaaa cccaaaaaca gagtgcatag tttagctttt
3801 gtgttgtagg agccagagac caaagatcca gacaactggt gagggcggtc
3851 gatggtgcga agtaaattag aaaggggggc gtttacccac gtcctccctt
3901 gccc