Sequence of DPV Barley yellow dwarf virus-PAV

Barley yellow dwarf virus - PAV coat protein mRNA, complete cds; and readthrough domain mRNA, partial cds.

ACC No: AY040343

Dated: 2006-02-27 | Length: 1953 | CRC: 797030697

                
ID   AY040343   standard; mRNA; VRL; 1953 BP.
XX
AC   AY040343;
XX
SV   AY040343.1
XX
DT   31-JUL-2001 (Rel. 68, Created)
DT   27-FEB-2006 (Rel. 86, Last updated, Version 3)
XX
DE   Barley yellow dwarf virus - PAV coat protein mRNA, complete cds; and
DE   readthrough domain mRNA, partial cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus - PAV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
XX
RN   [1]
RP   1-1953
RX   DOI; 10.1007/s00705-002-0859-6.
RX   PUBMED; 12376751.
RA   Papura D., Jacquot E., Dedryver C.A., Luche S., Riault G., Bossis M.,
RA   Rabilloud T.;
RT   "Two-dimensional electrophoresis of proteins discriminates aphid clones of
RT   Sitobion avenae differing in BYDV-PAV transmission";
RL   Arch. Virol. 147(10):1881-1898(2002).
XX
RN   [2]
RP   1-1953
RA   Kervarrec C., Jacquot E.;
RT   ;
RL   Submitted (14-JUN-2001) to the EMBL/GenBank/DDBJ databases.
RL   UMR BiO3P, INRA, BP29, Domaine de la Motte, Le Rheu 35653, France
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1953
FT                   /db_xref="taxon:12040"
FT                   /mol_type="mRNA"
FT                   /organism="Barley yellow dwarf virus - PAV"
FT                   /serotype="PAV13"
FT   CDS             1. .603
FT                   /codon_start=1
FT                   /db_xref="GOA:Q91GX7"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:Q91GX7"
FT                   /product="coat protein"
FT                   /protein_id="AAK77214.1"
FT                   /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSVRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF
FT                   QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
FT   CDS             <604. .1953
FT                   /codon_start=1
FT                   /db_xref="GOA:Q91GX6"
FT                   /db_xref="InterPro:IPR000893"
FT                   /db_xref="InterPro:IPR002929"
FT                   /db_xref="UniProtKB/TrEMBL:Q91GX6"
FT                   /note="expressed as a result of translational readthrough
FT                   of the coat protein amber codon"
FT                   /product="readthrough domain"
FT                   /protein_id="AAK77215.1"
FT                   /translation="VDSSTPEPKPAPEPAPTPQPTPAPQPAPEPTPAPVPKRFFEYIGT
FT                   PTGTISTRENSDSISVSKLGGQSMQYIENEKCETKVIDSFWSTNNNVSAQAAFVYPVPE
FT                   GSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNSSGDNWGVGNYKGCSFKNFLATNTW
FT                   RPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGTDACFYLMAPKTMKTDKYNYVVSYG
FT                   GYTNKRMEFGTISVTFDESDVEAKRITRHAETPIRSKHILVSERYEEPLPTITNQGLCD
FT                   VKTPEQEQTLVDEEDRQTVSTEPDVALQEYEAATAEIPDAEEDVLPSKEQLSSKPLDTS
FT                   GNIIPKSKEPEVLGTYQGQNIYPEDVPPLARQRLREAAKAPSTLLYERTPKKSNNFLTR
FT                   FVEANRSPTTPAAPTVSTTSNMTREQLAEYTRIRKSLGLTAAKEYKAQFQ"
XX
SQ   Sequence 1953 BP; 590 A; 509 C; 457 G; 397 T; 0 other;

ay040343 Length: 1953  27-FEB-2006  Type: N  Check: 6634  ..

       1  atgaattcag taggccgtag aggacctaga cgcgcaaatc aaaatggcac
      51  aagaaggagg cgccgtagaa cagttcggcc agtggttgtg gtccaaccca
     101  atcgagcagg acccagacga cgaaatggtc gacgcaaggg aagaggaggg
     151  gcaaatcctg tatttagacc aacaggcggg actgaggtat tcgtattctc
     201  agtcgacaac cttaaagcca actcttccgg ggcaatcaaa ttcggcccca
     251  gtctatcgca atgcccagcg ctttcagacg gaatacttaa gtcctaccac
     301  cgttacaaga tcacaagtgt ccgtgttgag tttaagtcac acgcgtccgc
     351  aactacggcc ggcgctatct ttattgaact cgacaccgcg tgcaaacaat
     401  cagccctggg tagctacatt aattccttca caatcagcag gaccgcctcc
     451  aaggtcttca gagccgaagc gattaacggg aaggaattcc aggaatcgac
     501  gatagaccag ttctggatgc tctacaaggc caatggaacc accactgaca
     551  cggcaggaca attcattatc acgatgagtg tcagtttaat gacggccaaa
     601  taggtagact cctcaacacc ggaaccgaaa cctgcaccag aacccgcacc
     651  aaccccacag ccgacgccag ctccacagcc cgcacctgaa ccaactcctg
     701  caccagtccc caaaagattc tttgagtata tcggcactcc aaccggtaca
     751  atctcaacta gagagaactc tgacagcatc tctgtcagca agctcggtgg
     801  acaatccatg cagtacatag agaatgagaa atgtgaaaca aaggtcattg
     851  actccttctg gagcactaac aacaacgtgt ctgcacaggc agccttcgtt
     901  tacccagtgc cagaaggatc atacagcgta aacatttcgt gcgaaggctt
     951  tcaatccgtt gaccacatag ggggcaacga ggatggctat tggattggtt
    1001  taattgccta ctccaattcg tcaggagaca attggggggt gggcaactac
    1051  aaagggtgca gtttcaagaa cttcttggca accaacactt ggagaccagg
    1101  ccacaaagat ctcaagttga atgactgcca gttcacagat ggacaaatag
    1151  ttgaaaggga cgccgtgatg tcttttcacg tcgaagctac aggtactgat
    1201  gcctgtttct acctaatggc tcccaaaaca atgaaaactg acaagtacaa
    1251  ctatgttgtc tcttacggag ggtacacaaa caaacgaatg gaatttggta
    1301  ccatatctgt gacattcgat gaatccgatg ttgaggcaaa acgcataaca
    1351  aggcacgctg aaactcccat ccgctccaag cacatccttg tgtccgagcg
    1401  gtatgaggag ccattgccca ccataaccaa tcaaggcttg tgtgatgtga
    1451  aaactcccga gcaagaacaa acattggtgg atgaagaaga cagacaaact
    1501  gtttccactg aacctgatgt agcactccag gaatacgaag ctgccacagc
    1551  tgaaattcct gatgctgaag aggatgtttt gccctccaag gaacagctgt
    1601  cctctaagcc attggacacg tctggcaata taatacctaa atccaaggaa
    1651  cctgaagtac ttggaacata ccagggtcag aacatttacc ctgaagacgt
    1701  gccaccgcta gcgcggcaga gattgcgtga agccgcgaaa gcaccctcca
    1751  cgttgttata tgagcgaacg ccgaagaaga gcaacaactt cttgactcgt
    1801  tttgtggagg cgaataggtc ccctaccact cccgctgccc caacagtgtc
    1851  aactacatca aacatgacaa gggaacagct tgcggagtac actagaatta
    1901  ggaaatccct tgggctcaca gcagcgaagg aatacaaggc gcaatttcag
    1951  tga