Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus isolate Malfa5, complete genome.
ACC No: AY122286
Dated: 2005-04-16 | Length: 4271 | CRC: 1702058945
!!NA_SEQUENCE 1.0
ID AY122286 standard; mRNA; VRL; 4271 BP.
XX
AC AY122286;
XX
SV AY122286.1
XX
DT 06-AUG-2002 (Rel. 72, Created)
DT 16-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Melon necrotic spot virus isolate Malfa5, complete genome.
XX
KW .
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4271
RX DOI; 10.1007/s00705-002-0927-y.
RX MEDLINE; 22494360.
RX PUBMED; 12607110.
RA Diaz J.A., Bernal J.J., Moriones E., Aranda M.A.;
RT "Nucleotide sequence and infectious transcripts from a full-length cDNA
RT clone of the carmovirus Melon necrotic spot virus";
RL Arch. Virol. 148(3):599-607(2003).
XX
RN [2]
RP 1-4271
RA Diaz J.A., Bernal J.J., Moriones E., Aranda M.A.;
RT ;
RL Submitted (14-JUN-2002) to the EMBL/GenBank/DDBJ databases.
RL Laboratorio Virologia, Consejo Superior de Investigaciones Cientificas,
RL Estacion Experimental La Mayora, Algarrogo-Costa, Malaga 29750, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .4271
FT /db_xref="taxon:11987"
FT /mol_type="mRNA"
FT /organism="Melon necrotic spot virus"
FT /isolate="Malfa5"
FT CDS 85. .2460
FT /codon_start=1
FT /db_xref="GOA:Q8JMI2"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q8JMI2"
FT /transl_except=(pos:889. .891,aa:OTHER)
FT /product="p89"
FT /protein_id="AAM83188.1"
FT /translation="MDTGLKVLVNGGLATSSVFRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCNKIVKVASIIGIGYLGLRVGAAWCRRSPSVANSIISYGEEVVEQVKVDIDR
FT DAEEESDTGEEIVVGSIGIGIHTNINPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS
FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND
FT KKDLEPAPRPISGAFDRLTWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL
FT EGLSVQRRDAYLKTFVKAEKINTTKKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG
FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSTDALKWEHNVY
FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEIFEQIE
FT FCQMRPVFDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV
FT VQSYYNMMIRNTQSINSSSILRDVSFASGFRELARLGNRKSSAISENARFSFYLAFGIT
FT PDLQRAMESDYDAHTIDWGFVPQGNPRIQPISWTLNEL"
FT CDS 85. .891
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q8JMI1"
FT /product="p29"
FT /protein_id="AAM83189.1"
FT /translation="MDTGLKVLVNGGLATSSVFRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCNKIVKVASIIGIGYLGLRVGAAWCRRSPSVANSIISYGEEVVEQVKVDIDR
FT DAEEESDTGEEIVVGSIGIGIHTNINPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN"
FT CDS 2439. .2636
FT /codon_start=1
FT /db_xref="GOA:Q8JMI0"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProt/TrEMBL:Q8JMI0"
FT /product="p7A"
FT /protein_id="AAM83190.1"
FT /translation="MDPQRTVEQTKPRGRSKDRDDSGGKQKNSMGRKIANDAISESKQG
FT VMGASTYIADKIKVTINFNF"
FT CDS 2640. .2825
FT /codon_start=1
FT /db_xref="InterPro:IPR009575"
FT /db_xref="UniProt/TrEMBL:Q8JMH9"
FT /product="p7B"
FT /protein_id="AAM83191.1"
FT /translation="MACYHCDSSPGDYSGALLILFISFVLFCITSLSPQGNTYVHHFDN
FT SSIKTQYVGISTNGDG"
FT CDS 2812. .3984
FT /codon_start=1
FT /db_xref="GOA:Q8JMH8"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q8JMH8"
FT /product="coat protein p42"
FT /protein_id="AAM83192.1"
FT /translation="MAMVKRINNLPTVKLAKQALPLLADPKLVNKAIDVVPLVVQGGQK
FT LSKAAKRLLGAYGGNISYTEGARPGTISAPVAISRRVAGMKPRFVRSEGSVKIVHREFV
FT ASVLPSNDLTVNNGDVNVGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRITYIPTTGS
FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSSPWAENVLVVPCDNIWRYMNDTNAV
FT DRKLVDFGQFLFATYSGDGVTAHGDLYVEYAVEFKDPQPIAGIVCMFDRSVSFSEVGST
FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKPVGNSLNVT
FT SSGASALTFTLNSTGIPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA"
XX
SQ Sequence 4271 BP; 1067 A; 886 C; 1062 G; 1256 T; 0 other;
AY122286 Length: 4271 April 19, 2005 08:53 Type: N Check: 4182 ..
1 ggatatctct agccggatcc ccgactctct tgtttctgtg agattgttcg
51 cgtgcctgtt tattttcttt ggcataggtt agcaatggat actggattga
101 aagttcttgt taatggaggt ttagccacct cgtctgtttt tcggaaagtg
151 agtgctgtga gttcattgga ttcgtccctc ccctcatcgt caatactgtc
201 agccattcat gggtcttgga ctagtgctat cagccacgat tgcaataaga
251 ttgttaaggt tgcttctatt attggtatcg gctacctcgg gttgcgcgtt
301 ggtgccgctt ggtgtcgtcg ctcccccagt gttgccaatt ccattatatc
351 atatggggaa gaagtggttg agcaagtaaa ggttgacatt gatagggatg
401 ctgaggaaga gtccgatact ggtgaggaaa ttgtggttgg ttcgatcggc
451 attggaatac ataccaatat caacccagag gttcgagcta agcgaaggca
501 tagatcaagg ccgttcatta agaagatcgt gaatctgacc aaaaatcatt
551 ttggagggtg ccctgattct agcaaatcga acgttatggc tgttagcaag
601 tttgtttatg agcaatgtaa gcagcacaat tgtcttccac atcaaacgag
651 attgatcatg agtatagcag ttccattggt attgagtccc gatatgtatg
701 atatttctag caaggctctg ttgaatagcg agatattgac agagaacaga
751 gctacgctgg accgcctcaa aactctcgat gggtggctgt cacatttggt
801 gtgccatccc ttaagcgcta aggcttggag gcgggctatt gacaacttgt
851 gtggtcttcc ggactggaag gctttcaagt tggtcaacta ggggtgccta
901 gaggaactcg ctgggttctg tacttcggta cggaggggga cgcacccaga
951 catgaccgag tttcctcagg atcgtcccat caaaacacgc aaactgtatt
1001 gtctaggggg agttggaact agcgtgaagt tcaacgtgca taataactct
1051 cttgccaacc ttcggcgcgg tctcatagaa cgcgttttct ttgttgaaaa
1101 tgataagaag gaccttgagc ctgcccctag accaattagt ggtgcttttg
1151 atcgcttgac ctggtttcgc agaaagctac ataatattgt gggtactcat
1201 tccagtatta gtcctggtca attcttggac ttttatactg gcaggaggcg
1251 cactatatat gagggcgctg tcaaatcgtt ggaggggttg agtgttcaac
1301 gaagagatgc ttatttgaaa acatttgtca aagcggagaa gattaacacc
1351 actaagaaac ctgacccagc tccgcgggtc atacaaccga ggaatgtacg
1401 ttataatgtt gaagttggtc ggtatctacg taggtttgag cattacctct
1451 atagaggaat tgacgaaatt tggaatgggc ccactattat aaagggatac
1501 actgtcgaac agattggtaa gatagcccgt gacgcatggg attcattcgt
1551 gagtccggtt gctattggat ttgatatgaa acggttcgat cagcatgtat
1601 ccaccgacgc tcttaaatgg gaacataatg tttatcttga tgccttttgc
1651 catgattcgt acttagctga gttattagaa tggcaattgg tcaataaggg
1701 tgttgggtac gccagtgatg gaatgatcaa atataaggtt gacgggtgtc
1751 gtatgagtgg tgatatgaat acagctatgg gtaattgtct gattgcttgt
1801 gctatcacac atgatttctt tcgtagtcgt ggtatcaggg cgcgtttgat
1851 gaacaatggt gatgattgcg ttgtaatatg tgaaaaggaa tgtgccgcgg
1901 tggtcaaagc cgacatggta aggcactgga gacaattcgg gtttcagtgt
1951 gaactcgagt gcgacgcaga aatctttgaa cagattgaat tttgtcagat
2001 gcgacctgtg ttcgatggtg agaagtatgt gatggtacgg aatccgttag
2051 ttagcctatc aaaagactcc tactcagtcg gtccctggaa cggaatcaac
2101 catgcacgca agtgggttaa tgctgttggc ttgtgtggct tatccctcac
2151 tggtggaata cctgttgtcc agagttatta taatatgatg atccgaaaca
2201 cccagtccat taacagctct agcatacttc gtgatgttag ctttgctagt
2251 ggatttcggg agttggctcg gttgggcaat aggaaaagta gtgccatttc
2301 tgaaaacgcc cgttttagct tttatctcgc gtttggcatt actccagatt
2351 tacaacgtgc catggaaagt gactatgatg ctcataccat tgactggggt
2401 ttcgtgcccc agggaaatcc tagaatacag ccaatctcat ggaccctcaa
2451 cgaactgtag aacaaactaa acctcgggga agaagtaaag atcgtgatga
2501 tagtggggga aaacagaaga attcaatggg gcgaaagata gccaatgatg
2551 ctatctctga atcgaagcag ggagttatgg gggcgagcac atatattgcc
2601 gacaaaatta aagttaccat aaactttaat ttttaatata tggcttgtta
2651 ccactgtgac tccagccccg gggattactc tggagcattg cttatactat
2701 ttatctcatt cgtcttattc tgcattacct cgcttagccc gcaaggaaat
2751 acttacgttc atcacttcga taattcttcc attaaaacac aatacgttgg
2801 catctctacc aatggcgatg gttaaacgca ttaacaattt accaacagtg
2851 aagcttgcta aacaggccct acctctctta gctgatccaa aattagtgaa
2901 caaagctatt gatgtggttc ctttggtagt ccaaggtggt cagaaattgt
2951 ctaaagctgc caagcggttg cttggtgctt acggaggcaa catttcttac
3001 actgagggcg ccagacccgg taccatttcc gcccccgtcg ccattagtcg
3051 ccgagtggcg ggcatgaagc ccaggtttgt tagatctgaa ggatctgtga
3101 agatagttca tagggaattt gttgcttctg ttcttccgtc taatgacctc
3151 actgttaata atggtgacgt caatgttggg aagtataggg tcaatcctag
3201 taataatgct ctgttcacat ggcttcaggg acaagcgcaa ttgtatgata
3251 tgtacagatt cacccgctta cgaatcacct atataccaac caccggttct
3301 acttccacag gccgagtctc tatcctctgg gatagagatt ctcaggaccc
3351 gcttccaatt gatcgtgcgg ccattagctc ttatgctcat tatgccgatt
3401 cgtcaccctg ggctgagaat gtcctggtgg tgccgtgcga caatatatgg
3451 aggtacatga atgataccaa tgctgtagac cgaaagttgg ttgattttgg
3501 gcaatttctc tttgcgactt attctggtga tggtgtcact gcccatggtg
3551 atctctatgt cgaatacgct gtcgagttta aagacccaca gccaatagcc
3601 gggatagttt gtatgtttga ccgttcggtg tccttctctg aagtcggatc
3651 caccatcaag ggggtgaatt atattgctga tcgcgacgtg ataactactg
3701 ggggcaatat tggtgttaac atcaatattc ccgggaccta tctcgttacg
3751 attgtattga atgccacctc gattggttct ctcaccttca ctggaaattc
3801 taaacctgta ggcaacagtc ttaacgtcac tagtagcgga gcgtctgctt
3851 tgaccttcac tctcaattcc accggcattc ccaacagtag taactcatca
3901 ttctcagttg gtactgtcgt ggctttgacg agggttcgca tgacgatcac
3951 tcggtgttct cccgaaactg cctacctcgc ctaattataa atctctttgt
4001 atactctcca agtttgttcc tttttattcc tacttgttct cagccagatc
4051 tctgttctgg tgtcttatag atttccctgt tgtgtgtagt gcggtctggc
4101 taaccgtaac ggcgtatcgg caaggatttt cgatgattag gttccaggat
4151 gtacgacata gctgaagata gatggagttt gaaggatcac cgctagcaaa
4201 atacactctg tgtggggcgt gctggtggat agtcatgtaa gtttgagatg
4251 ggttttcggc ccatcccgcc c