Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus isolate Malfa5, complete genome.
ACC No: AY122286
Dated: 2005-04-16 | Length: 4271 | CRC: 1702058945
!!NA_SEQUENCE 1.0 ID AY122286 standard; mRNA; VRL; 4271 BP. XX AC AY122286; XX SV AY122286.1 XX DT 06-AUG-2002 (Rel. 72, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Melon necrotic spot virus isolate Malfa5, complete genome. XX KW . XX OS Melon necrotic spot virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Carmovirus. XX RN [1] RP 1-4271 RX DOI; 10.1007/s00705-002-0927-y. RX MEDLINE; 22494360. RX PUBMED; 12607110. RA Diaz J.A., Bernal J.J., Moriones E., Aranda M.A.; RT "Nucleotide sequence and infectious transcripts from a full-length cDNA RT clone of the carmovirus Melon necrotic spot virus"; RL Arch. Virol. 148(3):599-607(2003). XX RN [2] RP 1-4271 RA Diaz J.A., Bernal J.J., Moriones E., Aranda M.A.; RT ; RL Submitted (14-JUN-2002) to the EMBL/GenBank/DDBJ databases. RL Laboratorio Virologia, Consejo Superior de Investigaciones Cientificas, RL Estacion Experimental La Mayora, Algarrogo-Costa, Malaga 29750, Spain XX FH Key Location/Qualifiers FH FT source 1. .4271 FT /db_xref="taxon:11987" FT /mol_type="mRNA" FT /organism="Melon necrotic spot virus" FT /isolate="Malfa5" FT CDS 85. .2460 FT /codon_start=1 FT /db_xref="GOA:Q8JMI2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007095" FT /db_xref="UniProt/TrEMBL:Q8JMI2" FT /transl_except=(pos:889. .891,aa:OTHER) FT /product="p89" FT /protein_id="AAM83188.1" FT /translation="MDTGLKVLVNGGLATSSVFRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCNKIVKVASIIGIGYLGLRVGAAWCRRSPSVANSIISYGEEVVEQVKVDIDR FT DAEEESDTGEEIVVGSIGIGIHTNINPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND FT KKDLEPAPRPISGAFDRLTWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL FT EGLSVQRRDAYLKTFVKAEKINTTKKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSTDALKWEHNVY FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEIFEQIE FT FCQMRPVFDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV FT VQSYYNMMIRNTQSINSSSILRDVSFASGFRELARLGNRKSSAISENARFSFYLAFGIT FT PDLQRAMESDYDAHTIDWGFVPQGNPRIQPISWTLNEL" FT CDS 85. .891 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q8JMI1" FT /product="p29" FT /protein_id="AAM83189.1" FT /translation="MDTGLKVLVNGGLATSSVFRKVSAVSSLDSSLPSSSILSAIHGSW FT TSAISHDCNKIVKVASIIGIGYLGLRVGAAWCRRSPSVANSIISYGEEVVEQVKVDIDR FT DAEEESDTGEEIVVGSIGIGIHTNINPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN" FT CDS 2439. .2636 FT /codon_start=1 FT /db_xref="GOA:Q8JMI0" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProt/TrEMBL:Q8JMI0" FT /product="p7A" FT /protein_id="AAM83190.1" FT /translation="MDPQRTVEQTKPRGRSKDRDDSGGKQKNSMGRKIANDAISESKQG FT VMGASTYIADKIKVTINFNF" FT CDS 2640. .2825 FT /codon_start=1 FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProt/TrEMBL:Q8JMH9" FT /product="p7B" FT /protein_id="AAM83191.1" FT /translation="MACYHCDSSPGDYSGALLILFISFVLFCITSLSPQGNTYVHHFDN FT SSIKTQYVGISTNGDG" FT CDS 2812. .3984 FT /codon_start=1 FT /db_xref="GOA:Q8JMH8" FT /db_xref="HSSP:2TBV" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProt/TrEMBL:Q8JMH8" FT /product="coat protein p42" FT /protein_id="AAM83192.1" FT /translation="MAMVKRINNLPTVKLAKQALPLLADPKLVNKAIDVVPLVVQGGQK FT LSKAAKRLLGAYGGNISYTEGARPGTISAPVAISRRVAGMKPRFVRSEGSVKIVHREFV FT ASVLPSNDLTVNNGDVNVGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRITYIPTTGS FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSSPWAENVLVVPCDNIWRYMNDTNAV FT DRKLVDFGQFLFATYSGDGVTAHGDLYVEYAVEFKDPQPIAGIVCMFDRSVSFSEVGST FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKPVGNSLNVT FT SSGASALTFTLNSTGIPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA" XX SQ Sequence 4271 BP; 1067 A; 886 C; 1062 G; 1256 T; 0 other; AY122286 Length: 4271 April 19, 2005 08:53 Type: N Check: 4182 .. 1 ggatatctct agccggatcc ccgactctct tgtttctgtg agattgttcg 51 cgtgcctgtt tattttcttt ggcataggtt agcaatggat actggattga 101 aagttcttgt taatggaggt ttagccacct cgtctgtttt tcggaaagtg 151 agtgctgtga gttcattgga ttcgtccctc ccctcatcgt caatactgtc 201 agccattcat gggtcttgga ctagtgctat cagccacgat tgcaataaga 251 ttgttaaggt tgcttctatt attggtatcg gctacctcgg gttgcgcgtt 301 ggtgccgctt ggtgtcgtcg ctcccccagt gttgccaatt ccattatatc 351 atatggggaa gaagtggttg agcaagtaaa ggttgacatt gatagggatg 401 ctgaggaaga gtccgatact ggtgaggaaa ttgtggttgg ttcgatcggc 451 attggaatac ataccaatat caacccagag gttcgagcta agcgaaggca 501 tagatcaagg ccgttcatta agaagatcgt gaatctgacc aaaaatcatt 551 ttggagggtg ccctgattct agcaaatcga acgttatggc tgttagcaag 601 tttgtttatg agcaatgtaa gcagcacaat tgtcttccac atcaaacgag 651 attgatcatg agtatagcag ttccattggt attgagtccc gatatgtatg 701 atatttctag caaggctctg ttgaatagcg agatattgac agagaacaga 751 gctacgctgg accgcctcaa aactctcgat gggtggctgt cacatttggt 801 gtgccatccc ttaagcgcta aggcttggag gcgggctatt gacaacttgt 851 gtggtcttcc ggactggaag gctttcaagt tggtcaacta ggggtgccta 901 gaggaactcg ctgggttctg tacttcggta cggaggggga cgcacccaga 951 catgaccgag tttcctcagg atcgtcccat caaaacacgc aaactgtatt 1001 gtctaggggg agttggaact agcgtgaagt tcaacgtgca taataactct 1051 cttgccaacc ttcggcgcgg tctcatagaa cgcgttttct ttgttgaaaa 1101 tgataagaag gaccttgagc ctgcccctag accaattagt ggtgcttttg 1151 atcgcttgac ctggtttcgc agaaagctac ataatattgt gggtactcat 1201 tccagtatta gtcctggtca attcttggac ttttatactg gcaggaggcg 1251 cactatatat gagggcgctg tcaaatcgtt ggaggggttg agtgttcaac 1301 gaagagatgc ttatttgaaa acatttgtca aagcggagaa gattaacacc 1351 actaagaaac ctgacccagc tccgcgggtc atacaaccga ggaatgtacg 1401 ttataatgtt gaagttggtc ggtatctacg taggtttgag cattacctct 1451 atagaggaat tgacgaaatt tggaatgggc ccactattat aaagggatac 1501 actgtcgaac agattggtaa gatagcccgt gacgcatggg attcattcgt 1551 gagtccggtt gctattggat ttgatatgaa acggttcgat cagcatgtat 1601 ccaccgacgc tcttaaatgg gaacataatg tttatcttga tgccttttgc 1651 catgattcgt acttagctga gttattagaa tggcaattgg tcaataaggg 1701 tgttgggtac gccagtgatg gaatgatcaa atataaggtt gacgggtgtc 1751 gtatgagtgg tgatatgaat acagctatgg gtaattgtct gattgcttgt 1801 gctatcacac atgatttctt tcgtagtcgt ggtatcaggg cgcgtttgat 1851 gaacaatggt gatgattgcg ttgtaatatg tgaaaaggaa tgtgccgcgg 1901 tggtcaaagc cgacatggta aggcactgga gacaattcgg gtttcagtgt 1951 gaactcgagt gcgacgcaga aatctttgaa cagattgaat tttgtcagat 2001 gcgacctgtg ttcgatggtg agaagtatgt gatggtacgg aatccgttag 2051 ttagcctatc aaaagactcc tactcagtcg gtccctggaa cggaatcaac 2101 catgcacgca agtgggttaa tgctgttggc ttgtgtggct tatccctcac 2151 tggtggaata cctgttgtcc agagttatta taatatgatg atccgaaaca 2201 cccagtccat taacagctct agcatacttc gtgatgttag ctttgctagt 2251 ggatttcggg agttggctcg gttgggcaat aggaaaagta gtgccatttc 2301 tgaaaacgcc cgttttagct tttatctcgc gtttggcatt actccagatt 2351 tacaacgtgc catggaaagt gactatgatg ctcataccat tgactggggt 2401 ttcgtgcccc agggaaatcc tagaatacag ccaatctcat ggaccctcaa 2451 cgaactgtag aacaaactaa acctcgggga agaagtaaag atcgtgatga 2501 tagtggggga aaacagaaga attcaatggg gcgaaagata gccaatgatg 2551 ctatctctga atcgaagcag ggagttatgg gggcgagcac atatattgcc 2601 gacaaaatta aagttaccat aaactttaat ttttaatata tggcttgtta 2651 ccactgtgac tccagccccg gggattactc tggagcattg cttatactat 2701 ttatctcatt cgtcttattc tgcattacct cgcttagccc gcaaggaaat 2751 acttacgttc atcacttcga taattcttcc attaaaacac aatacgttgg 2801 catctctacc aatggcgatg gttaaacgca ttaacaattt accaacagtg 2851 aagcttgcta aacaggccct acctctctta gctgatccaa aattagtgaa 2901 caaagctatt gatgtggttc ctttggtagt ccaaggtggt cagaaattgt 2951 ctaaagctgc caagcggttg cttggtgctt acggaggcaa catttcttac 3001 actgagggcg ccagacccgg taccatttcc gcccccgtcg ccattagtcg 3051 ccgagtggcg ggcatgaagc ccaggtttgt tagatctgaa ggatctgtga 3101 agatagttca tagggaattt gttgcttctg ttcttccgtc taatgacctc 3151 actgttaata atggtgacgt caatgttggg aagtataggg tcaatcctag 3201 taataatgct ctgttcacat ggcttcaggg acaagcgcaa ttgtatgata 3251 tgtacagatt cacccgctta cgaatcacct atataccaac caccggttct 3301 acttccacag gccgagtctc tatcctctgg gatagagatt ctcaggaccc 3351 gcttccaatt gatcgtgcgg ccattagctc ttatgctcat tatgccgatt 3401 cgtcaccctg ggctgagaat gtcctggtgg tgccgtgcga caatatatgg 3451 aggtacatga atgataccaa tgctgtagac cgaaagttgg ttgattttgg 3501 gcaatttctc tttgcgactt attctggtga tggtgtcact gcccatggtg 3551 atctctatgt cgaatacgct gtcgagttta aagacccaca gccaatagcc 3601 gggatagttt gtatgtttga ccgttcggtg tccttctctg aagtcggatc 3651 caccatcaag ggggtgaatt atattgctga tcgcgacgtg ataactactg 3701 ggggcaatat tggtgttaac atcaatattc ccgggaccta tctcgttacg 3751 attgtattga atgccacctc gattggttct ctcaccttca ctggaaattc 3801 taaacctgta ggcaacagtc ttaacgtcac tagtagcgga gcgtctgctt 3851 tgaccttcac tctcaattcc accggcattc ccaacagtag taactcatca 3901 ttctcagttg gtactgtcgt ggctttgacg agggttcgca tgacgatcac 3951 tcggtgttct cccgaaactg cctacctcgc ctaattataa atctctttgt 4001 atactctcca agtttgttcc tttttattcc tacttgttct cagccagatc 4051 tctgttctgg tgtcttatag atttccctgt tgtgtgtagt gcggtctggc 4101 taaccgtaac ggcgtatcgg caaggatttt cgatgattag gttccaggat 4151 gtacgacata gctgaagata gatggagttt gaaggatcac cgctagcaaa 4201 atacactctg tgtggggcgt gctggtggat agtcatgtaa gtttgagatg 4251 ggttttcggc ccatcccgcc c