Sequence of DPV Infectious salmon anemia virus

Infectious salmon anemia virus isolate Bremnes 98 segment 1, complete sequence.

ACC No: AY168787

Dated: 2003-05-29 | Length: 2260 | CRC: -346209941

                !!NA_SEQUENCE 1.0
ID   AY168787   standard; mRNA; VRL; 2260 BP.
XX
AC   AY168787;
XX
SV   AY168787.1
XX
DT   31-DEC-2002 (Rel. 74, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 3)
XX
DE   Infectious salmon anemia virus isolate Bremnes 98 segment 1, complete
DE   sequence.
XX
KW   .
XX
OS   Infectious salmon anemia virus
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC   unclassified Orthomyxoviridae.
XX
RN   [1]
RP   1-2260
RX   MEDLINE; 22495575.
RX   PUBMED; 12606081.
RA   Snow M., Ritchie R., Arnaud O., Villoing S., Aspehaug V., Cunningham C.O.;
RT   "Isolation and characterisation of segment 1 of the infectious salmon
RT   anaemia virus genome";
RL   Virus Res. 92(1):99-105(2003).
XX
RN   [2]
RP   1-2260
RA   Villoing S., Biering E., Krossoy B.;
RT   ;
RL   Submitted (25-OCT-2002) to the EMBL/GenBank/DDBJ databases.
RL   R&D, Intervet Norbio AS, Thormohlensgate 55, Bergen 5008, Norway
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2260
FT                   /db_xref="taxon:55987"
FT                   /mol_type="mRNA"
FT                   /organism="Infectious salmon anemia virus"
FT                   /isolate="Bremnes 98"
FT                   /segment="1"
FT   CDS             10. .2178
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q8B470"
FT                   /product="putative RNA polymerase PB2 subunit"
FT                   /protein_id="AAO12126.1"
FT                   /translation="MDFISENTISDKTTLEELKNATLFQVTKVDDRDCLKARRICNAPK
FT                   GHWAGLMEKAKAMGDPTEEEKDELKKIVESYNTVSVLGVSKSEGATGPRLVSSLKGLKN
FT                   LLPGVNPKTLQETLLVGAPCPSTEPTTEEYWNVCRAAVGASMGSAKINMSQKVVMGASV
FT                   IGWGQLNQSGPGVYFLNTKEIVTAEGKVDETRGPLERTSAPLMRDISRLIRETIEEVET
FT                   GGDPSFSVRSEGGSKIEGRIAFSLHSEVSTLKMRIALEQKLAKYEYMGENLLTLVKNTS
FT                   IDRMQPDSAMMGKMVLESLRTHTVSSEQLNGRMITVQSQGLETIAISSPFDVEYDDGYV
FT                   FTRMKGNFVAVGRDYKGAILCFREGQGTFFSGRGNWSGLMEKCLVEMRLCPCFYSCTWQ
FT                   DYPDKKSLYEKATFEAKQIVFAMGENTGVDIRVNTDGEIGDKGISLLTREREDKYMSKV
FT                   SYECRVVSGKLVMGLDKMSRVAKGNLEVVREKGDDTSQSDSFYEGVLQVGSMIGTTMES
FT                   LKQQLQGPVGIWRASGVSAMERCMKRGQSKTVVASARYTFQKMMEKMATGREVSKYSLI
FT                   IVMRCCIGFTSEANKRALTNISGTGYYISVAQPTVVKLAGEWLITPVGRSKTGEVQYVS
FT                   AKLKKGMTTGKLELIKKADRSDLDNFPEPSADELLREGTIVLMQIGKDKWLCRVRTGDR
FT                   RVRTDTDIQRAEAKSQVEKEDLMDEYGV"
XX
SQ   Sequence 2260 BP; 794 A; 386 C; 610 G; 470 T; 0 other;

AY168787  Length: 2260  October 13, 2004 17:42  Type: N  Check: 1122  ..

       1  cagctaagaa tggactttat atcagaaaac acgatcagcg acaaaaccac
      51  gctagaagaa ctgaaaaatg ctactttatt ccaagttact aaagtagacg
     101  acagggattg tctaaaagca agaagaatat gtaatgcacc taaagggcac
     151  tgggctggtc taatggaaaa agccaaggca atgggagacc caactgaaga
     201  ggaaaaagat gaattaaaga aaatagtcga gtcatacaac acagtatcag
     251  tgctgggtgt gtccaagtca gaaggagcaa caggaccaag gctggtctct
     301  agtttgaaag gactaaaaaa ccttctacct ggggtaaacc ccaagacact
     351  acaggaaaca cttctggtag gggcaccatg cccctcaacg gaaccaacta
     401  ccgaggagta ctggaatgtg tgtagagcag cagttggagc atcaatgggt
     451  tcagccaaga tcaatatgtc tcagaaggtg gtgatgggag ctagcgtcat
     501  cggatggggc caactgaacc aaagcggtcc aggagtgtat ttcttgaaca
     551  ctaaggaaat agttacagca gaagggaagg tagacgaaac aagaggaccc
     601  cttgaaagaa catcagctcc tctaatgaga gatatatcca ggctcattcg
     651  agaaacaata gaagaagttg aaacaggagg agatccctcc ttttcagtaa
     701  ggagtgaagg aggatcgaag attgaaggaa gaattgcatt ctctctccat
     751  tcagaagtgt caacattgaa aatgagaata gcactggagc aaaaactggc
     801  taaatacgag tacatgggag agaacttgtt gacacttgtc aagaacacgt
     851  caatagacag gatgcagccg gactctgcta tgatggggaa gatggtgctg
     901  gaaagcctga gaacacacac tgtttcatct gagcagctga atgggaggat
     951  gatcacagta cagtctcaag gattggaaac catagcaata tcaagtccgt
    1001  tcgatgtgga atacgatgat ggatacgttt tcacgaggat gaaagggaac
    1051  tttgttgcag tcggacgaga ttacaaaggg gccatattat gtttcagaga
    1101  aggtcaagga acattcttca gcggaagagg aaattggtca ggactgatgg
    1151  aaaaatgtct ggttgagatg agactatgtc cgtgcttcta cagctgcaca
    1201  tggcaagact acccagataa gaagagtctg tacgaaaagg caaccttcga
    1251  agccaaacag atagtgtttg caatgggaga aaacacaggg gtggacataa
    1301  gagtgaacac agacggtgag atcggagata aaggaatatc gctactcaca
    1351  agagagagag aagataagta catgtcaaag gtgtcatacg aatgcagagt
    1401  tgtgagcgga aaactggtta tgggtctgga caagatgagc agagtagcga
    1451  aggggaactt agaagtagtt agggagaaag gagatgatac tagtcagtca
    1501  gactcttttt atgagggagt tttgcaagtg ggtagcatga taggcacaac
    1551  gatggaaagc ctcaaacaac aacttcaagg acctgtcgga atctggagag
    1601  cttcaggggt gtctgctatg gagaggtgta tgaagagagg tcaaagtaag
    1651  acagtagtgg caagtgcaag atacactttc cagaaaatga tggagaagat
    1701  ggcaacaggt agagaagtgt cgaagtacag cttgattatt gtcatgagat
    1751  gctgcattgg tttcacttca gaagctaaca aaagagcact caccaacatc
    1801  tcaggaacag gttactacat tagtgttgca cagccaacag tggtgaaact
    1851  agccggagaa tggttgatca ccccagtggg tagatccaaa actggtgagg
    1901  tgcaatatgt ttcggccaaa ctgaagaagg gaatgaccac aggaaaacta
    1951  gaactgatta aaaaagcaga cagatcagat ctggacaatt ttcctgaacc
    2001  atcagcagat gaactgctaa gagagggaac gatcgtgcta atgcaaatag
    2051  ggaaagacaa gtggctttgc agagtaagaa caggggacag aagagttagg
    2101  acagacacag acatacaaag agccgaagcc aagtcacaag tcgaaaaaga
    2151  agacctgatg gatgaatatg gtgtttaatc aatgagtgtt ggtcaatatt
    2201  gctggtggtt ctttggtggg taagtctttg acgatctttt aatcattaaa
    2251  aaaaaaaaaa