Sequence of DPV Pennisetum mosaic virus

Pennisetum mosaic virus polyprotein gene, partial cds.

ACC No: AY172336

Dated: 2004-05-14 | Length: 1669 | CRC: -1966717467

                !!NA_SEQUENCE 1.0
ID   AY172336   standard; genomic RNA; VRL; 1669 BP.
XX
AC   AY172336;
XX
SV   AY172336.1
XX
DT   28-MAY-2003 (Rel. 75, Created)
DT   14-MAY-2004 (Rel. 79, Last updated, Version 2)
XX
DE   Pennisetum mosaic virus polyprotein gene, partial cds.
XX
KW   .
XX
OS   Pennisetum mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1669
RX   MEDLINE; 22640574.
RX   PUBMED; 12756626.
RA   Fan Z., Chen H., Cai S., Deng C., Wang W., Liang X., Li H.;
RT   "Molecular characterization of a distinct potyvirus from whitegrass in
RT   China";
RL   Arch. Virol. 148(6):1219-1224(2003).
XX
RN   [2]
RP   1-1669
RA   Fan Z., Chen H., Cai S., Deng C., Liang X., Wang W., Li H.;
RT   ;
RL   Submitted (04-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, China Agricultural Univ., 2 Yuanmingyuan West Road,
RL   Beijing 100094, P. R. China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1669
FT                   /country="China"
FT                   /db_xref="taxon:221262"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Pennisetum mosaic virus"
FT                   /specific_host="whitegrass"
FT   CDS             <1. .1428
FT                   /codon_start=1
FT                   /db_xref="TrEMBL:Q7TGB6"
FT                   /product="polyprotein"
FT                   /protein_id="AAO43494.1"
FT                   /translation="FANGDDLLLAVNPRYEYILDSFSNHFSNLGLNFDFSSRTRDKSEL
FT                   WFMSTRGIRYNDIYIPKLEKERIVAILEWDRSKQPQHRLEAICASMIEAWGYPDLLHEI
FT                   RKFYAWLLEMQPFANLAKEGQAPYIAESALQNLYTGNGVNENEIEKYFQQFKTDLHGYV
FT                   EDYNEDVYHQSGRVDAGTPPQTEEQKKAAEEQRQKAAADAEAKRKAAADEEARKAREAE
FT                   AERKRQADAAAKGEQDKDVNVGTHGTVAVPKLKAMSSKMRLPLAKGKNILHVEFLLNYK
FT                   PAQQDISNTRATRAEFDRWYDAVKNEYEVDDAQMTVIMSGLMVWCIENGCSPNINGVWT
FT                   MMDGEEQRTFPLKPVIENASPTFRQIMHHFSDAAEAYIEFRNATERYMPRYGLQRNLTD
FT                   YSLARYAFDFYEITSRTTARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHTA
FT                   GDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1. .519
FT                   /note="NIb; replicase"
FT                   /product="nuclear inclusion b protein"
FT   mat_peptide     520. .1425
FT                   /note="CP"
FT                   /product="coat protein"
FT   3'UTR           1429. .1669
XX
SQ   Sequence 1669 BP; 543 A; 315 C; 389 G; 422 T; 0 other;

  AY172336  Length: 1669  May 18, 2004 09:05  Type: N  Check: 887  ..

       1  tttgctaatg gtgatgatct attactagct gtcaatccta ggtatgagta
      51  tatcttagat tcttttagta atcatttttc aaatttaggt ttaaattttg
     101  acttttcatc acggacaaga gacaaatcag aactttggtt catgtctact
     151  cgaggaattc gatacaatga tatttacatt ccaaaactcg agaaagaaag
     201  gatagttgca atcttagaat gggatcgctc aaaacagcca cagcatagac
     251  ttgaagcaat ttgtgcatca atgattgaag catgggggta tccagactta
     301  ttacatgaga ttagaaagtt ttatgcttgg ctattagaga tgcaaccttt
     351  tgctaatttg gcgaaggaag gacaggcacc atacattgca gaatcggcac
     401  tacaaaatct gtatactgga aatggtgtta atgaaaatga gattgagaaa
     451  tattttcaac agttcaaaac tgatttacac ggatatgttg aagactataa
     501  tgaagatgtt tatcatcaga gtggtagagt ggatgccgga accccaccac
     551  aaacagaaga acagaagaaa gctgctgaag aacagagaca aaaagcagca
     601  gccgatgcag aagcgaagcg caaagcagca gcggatgagg aggcaagaaa
     651  agcgcgagag gctgaagcag agcggaaacg acaagcagat gccgccgcaa
     701  aaggagagca ggacaaggat gtcaatgtgg gaacacatgg aactgtagca
     751  gtaccaaaat tgaaagccat gtcctcaaaa atgcgcttac cactagccaa
     801  ggggaaaaac attttacatg tagaatttct tctcaactac aaaccagctc
     851  aacaagatat atctaataca cgagcaacca gagctgagtt tgatagatgg
     901  tatgatgctg tcaagaatga gtatgaagta gacgatgcac agatgacagt
     951  aatcatgagt ggactaatgg tatggtgcat agagaatggt tgctcaccta
    1001  acataaatgg agtgtggaca atgatggatg gagaagaaca aaggaccttt
    1051  ccacttaaac ctgtcattga aaatgcatca cccacatttc gacaaataat
    1101  gcaccatttt agtgatgcag ctgaagccta cattgaattc cgtaacgcaa
    1151  cggaaagata tatgccacga tatggtcttc agcgaaactt gaccgactat
    1201  agcttagctc gatatgcttt tgacttttac gagatcacat ctcgcacaac
    1251  agcacgagct aaggaagccc acatgcagat gaaagcagca gcagtgcgtg
    1301  gttcaaacac gcgcatgttt ggcttggatg ggaatgtcgg cgagtcccag
    1351  gagaatacag aacgtcacac tgctggcgac gtcagtcgca atatgcactc
    1401  ccttcttggg gtgcagcagc accattgatt cctggaaacc ctgtttgcag
    1451  taccttagta tttttataat tctataagga taatgaggct ctgcctccac
    1501  tttatatgct tttattaaga gtactataaa tcccttgcta ttctgcaaga
    1551  tgtgtgaggc tttgcctctt atcttatagg tttgagggat gtactagctt
    1601  cgaaccactg gacggacacc tgttgagtgg ctatgctacg ttgcagggtt
    1651  gcgagtttag tggcaagag