Sequence of DPV Avian adeno-associated virus
Avian adeno-associated virus ATCC VR-865, complete genome.
ACC No: AY186198
Dated: 2003-06-05 | Length: 4694 | CRC: 1202696293
!!NA_SEQUENCE 1.0
ID AY186198 standard; genomic DNA; VRL; 4694 BP.
XX
AC AY186198;
XX
SV AY186198.1
XX
DT 05-JUN-2003 (Rel. 76, Created)
DT 05-JUN-2003 (Rel. 76, Last updated, Version 1)
XX
DE Avian adeno-associated virus ATCC VR-865, complete genome.
XX
KW .
XX
OS Avian adeno-associated virus ATCC VR-865
OC Viruses; ssDNA viruses; Parvoviridae; Parvovirinae; Dependovirus.
XX
RN [1]
RP 1-4694
RX DOI; 10.1128/JVI.77.12.6799-6810.2003.
RX MEDLINE; 22652792.
RX PUBMED; 12768000.
RA Bossis I., Chiorini J.A.;
RT "Cloning of an avian adeno-associated virus (AAAV) and generation of
RT recombinant AAAV particles.";
RL J. Virol. 77(12):6799-6810(2003).
XX
RN [2]
RP 1-4694
RA Bossis I., Chiorini J.A.;
RT ;
RL Submitted (22-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL National Institute of Dental and Craniofacial Research, National Institutes
RL of Health, Building 10, Room 1N112, Bethesda, MD, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .4694
FT /db_xref="taxon:219704"
FT /mol_type="genomic DNA"
FT /organism="Avian adeno-associated virus ATCC VR-865"
FT /strain="ATCC VR-865"
FT repeat_region 1. .142
FT /note="inverted terminal repeat; ITR"
FT /rpt_type=INVERTED
FT gene 244. .2232
FT /gene="Rep"
FT CDS 244. .2232
FT /codon_start=1
FT /db_xref="GOA:Q7TG44"
FT /db_xref="UniProt/TrEMBL:Q7TG44"
FT /gene="Rep"
FT /product="rep protein"
FT /protein_id="AAO32086.1"
FT /translation="MRSYYEVIVQLPNDVESQVPGISDSFVNWITSREWTLPEDADWDL
FT DQVDQVQLTLGDKIQREIRTHWGTMAKEPDFHYFIQLEQGEVFFHLHVLLETCSVKPMV
FT LGRYIRHIQQKIVSKVYCATSLRWKDGCVVTKTKNFGGANKVRAESYIPAYLIPKQQPE
FT VQWAWTNVPEYIKACLHRELRASLARLHFEEAGVSQSKENLARTADGAPVMPTRVSKRY
FT MELVDWLVEKGITTEKEWLLENRESFRSFQASSNSARQIKTALQGAIQEMLLTKTAEDY
FT LVGKDPVSDDDIRQNRIYKILELNHYDPAYVGSILVGWCQKKWGKRNTLWLFGHATTGK
FT TNIAEAIAHAVPFYGCVNWTNENFPFNDCVEKMIIWWEEGKMTAKVVETAKAILGGSRV
FT RVDQKCKASVPIEPTPVIITSNTNMCYVIDGNTTTFEHKQPLEDRMFKLELLTRLPDDF
FT GKVTKQEVRQFFRWSQDHLTPVIPEFLVRKAESRKRPAPSGEGYISPTKRPALAEQQQA
FT SESADPVPTRYRIKCSKHCGMDKMLFPCQICESMNRDINICAIHKTTDCKECFPDYGDK
FT DDVELPPCTEHNVSRCYQCHSGELYRVTSDSDEKPAPESDEGTEPSYAPCTIHHLMGKS
FT HGLVTCAACRLKNSTLHDDLDDGDLEQ"
FT gene 2250. .4481
FT /gene="Cap"
FT CDS 2250. .4481
FT /codon_start=1
FT /db_xref="GOA:Q7TG43"
FT /db_xref="UniProt/TrEMBL:Q7TG43"
FT /gene="Cap"
FT /product="capsid protein"
FT /protein_id="AAO32087.1"
FT /translation="MSLISDAIPDWLERLVKKGVNAAADFYHLESGPPRPKANQQTQES
FT LEKDDSRGLVFPGYNYLGPFNGLDKGEPVNEADAAALEHDKAYDLEIKDGHNPYFEYNE
FT ADRRFQERLKDDTSFGGNLGKAIFQAKKRVLEPFGLVEDSKTAPTGDKRKGEDEPRLPD
FT TSSQTPKKNKKPRKERPSGGAEDPGEGTSSNAGAAAPASSVGSSIMAEGGGGPVGDAGQ
FT GADGVGNSSGNWHCDSQWLENGVVTRTTRTWVLPSYNNHLYKRIQGPSGGDNNNKFFGF
FT STPWGYFDYNRFHCHFSPRDWQRLINNNWGIRPKAMRFRLFNIQVKEVTVQDFNTTIGN
FT NLTSTVQVFADKDYQLPYVLGSATEGTFPPFPADIYTIPQYGYCTLNYNNEAVDRSAFY
FT CLDYFPSDMLRTGNNFEFTYTFEDVPFHSMFAHNQTLDRLMNPLVDQYLWAFSSVSQAG
FT SSGRALHYSRATKTNMAAQYRNWLPGPFFRDQQIFTGASNITKNNVFSVWEKGKQWELD
FT NRTNLMQPGPAAATTFSGEPDRQAMQNTLAFSRTVYDQTTATTDRNQILITNEDEIRPT
FT NSVGIDAWGAVPTNNQSIVTPGTRAAVNNQGALPGMVWQNRDIYPTGTHLAKIPDTDNH
FT FHPSPLIGRFGCKHPPPQIFIKNTPVPANPSETFQTAKVASFINQYSTGQCTVEIFWEL
FT KKETSKRWNPEIQFTSNFGNAADIQFAVSDTGSYSEPRPIGTRYLTKPL"
FT repeat_region 4552. .4694
FT /note="inverted terminal repeat; ITR"
FT /rpt_type=INVERTED
XX
SQ Sequence 4694 BP; 1209 A; 1312 C; 1229 G; 944 T; 0 other;
AY186198 Length: 4694 January 7, 2005 14:54 Type: N Check: 8930 ..
1 tggccagttt ccaagacagg ctcgctcgct cactcgggcc ggggccccaa
51 aggggcccct agcgaccgct tcgcggtcgc ggcccgagtg agcgagcgag
101 cctgtcttgg aaactggcca gcactccggt gaggtaatgc cgtcacgtgg
151 tcgggaatgg gaacgggaaa tctcgcgaga acgtaaacaa atataagacg
201 gcgccacacg gcgctgcgtc atacgcgcgc gcgcaccggc gagatgaggt
251 cgtactacga ggtcatcgtt cagctgccca acgacgtcga gagtcaggta
301 cctggaatct ccgattcgtt cgtcaactgg attacgtcgc gagaatggac
351 gttgcctgag gacgccgatt gggatttgga ccaggtcgat caagttcaac
401 tgacgctcgg cgacaaaatc caacgggaga ttcgaactca ttgggggacg
451 atggccaaag aaccggactt tcactatttt atccaactgg aacaaggtga
501 ggtgttcttt catttacacg tcctgctgga aacgtgttcc gtaaagccga
551 tggtactcgg aagatatatc cgacatattc aacaaaaaat tgtgagtaaa
601 gtctactgcg ccacgagcct acgatggaag gatggatgcg tggtgaccaa
651 gaccaaaaat ttcgggggcg cgaacaaggt ccgggccgag tcgtatattc
701 ccgcctacct gatcccgaaa cagcaaccgg aagtgcagtg ggcgtggact
751 aacgtgcccg agtatataaa agcgtgcttg caccgagaac tgcgtgccag
801 tctcgcgcga cttcacttcg aggaggcggg cgtctcgcaa tccaaggaaa
851 atctcgcgag aactgcagac ggcgctcccg tgatgccgac ccgcgtcagc
901 aaacgctaca tggagctcgt ggattggctc gtggagaagg ggatcaccac
951 cgagaaggaa tggctgctgg aaaacagaga aagctttcgg agctttcagg
1001 cctcgagcaa ctcggcgcgt cagatcaaga cggccctgca aggcgccatt
1051 caggagatgc ttctgaccaa gacggcggag gactacctcg tcggaaagga
1101 tcccgtctcg gacgacgaca tccgtcagaa ccgcatctac aagattctgg
1151 aactgaacca ctacgaccca gcgtacgtgg ggagtatttt ggtcgggtgg
1201 tgccagaaga aatggggcaa gcgaaacacg ctgtggctgt tcggacatgc
1251 gaccaccggc aagaccaaca tcgcggaggc tattgcccat gctgtgccgt
1301 tctatggatg cgttaactgg accaacgaga actttccgtt caacgactgc
1351 gtcgaaaaaa tgattatctg gtgggaggag ggcaaaatga ccgccaaagt
1401 ggtggaaaca gccaaggcga ttctgggagg atctcgggtg agagtggacc
1451 aaaaatgcaa agcttcggtt ccgatcgaac cgacgccggt cattattacc
1501 agtaacacca acatgtgtta tgtcatcgac gggaacacga ccacgttcga
1551 gcataagcag ccgttggagg acaggatgtt taagctcgaa ttgctgactc
1601 ggttgcctga tgactttggt aaggtgacca aacaggaggt gcgtcaattc
1651 ttcaggtggt ctcaggatca cctgacccct gtgatcccag aattcctagt
1701 gcggaaggcg gagtctcgca aaagacccgc cccttccggg gaaggctata
1751 taagcccgac aaagcggccc gcgctcgcag agcagcagca ggcgtcggag
1801 agcgcggacc cggttcccac caggtatcgt atcaaatgct cgaaacattg
1851 cggtatggat aaaatgttgt ttccttgcca aatttgtgaa tcgatgaaca
1901 gagatattaa tatttgtgct attcataaaa cgaccgactg taaagagtgt
1951 ttccccgact acggggataa agatgatgta gaactacccc cctgtacaga
2001 acacaacgtg tctcgttgtt atcaatgtca ttcgggcgaa ttgtatcgcg
2051 tgacttcgga ctctgacgag aaacctgccc ccgagagtga tgaaggcacc
2101 gagccatcct atgctccctg cacgattcac cacctgatgg gcaagagtca
2151 cgggttagtc acttgcgcgg cgtgtcggtt gaaaaatagt acgttgcatg
2201 atgacttgga tgacggtgat ctcgaacaat aaatgattga aatgtagcca
2251 tgtctctcat ttctgatgcg attccagatt ggttggagcg gttggtcaaa
2301 aagggagtga atgctgcagc tgatttctac catttggaaa gcggtcctcc
2351 tcgtcctaag gcaaatcagc aaactcaaga atctcttgaa aaggacgatt
2401 cgagaggtct cgtgttccca ggctacaatt atctaggccc tttcaacggt
2451 ctagataaag gagaacccgt caacgaggca gacgctgccg ccttagaaca
2501 cgacaaggct tacgacctcg aaatcaagga cgggcacaac ccgtactttg
2551 agtacaacga ggccgacaga cgtttccagg aacgtctcaa agacgatacc
2601 tcctttggag gcaatttagg taaagccatc ttccaggcca aaaagagggt
2651 tctcgaaccc tttggtctgg tggaagactc aaagacggct ccgaccggag
2701 acaagcggaa aggcgaagac gaacctcgtt tgcccgacac ttcttcacag
2751 actcccaaga aaaacaagaa gcctcgcaag gaaagacctt ccggcggggc
2801 agaagatccg ggcgaaggca cctcttccaa cgctggagca gcagcacccg
2851 cctctagtgt gggatcatct atcatggctg aaggaggtgg cggcccagtg
2901 ggcgatgcag gccagggtgc cgatggagtg ggcaattcct ccggaaattg
2951 gcattgcgat tcccaatggc tggaaaacgg agtcgtcact cgaaccaccc
3001 gaacctgggt cttgcccagc tacaacaacc acctgtacaa acgaatccaa
3051 ggacccagcg gaggcgacaa caacaacaaa ttctttggat tcagcacccc
3101 ctggggatac tttgactaca atcgattcca ctgccacttt tccccgcgag
3151 actggcaacg actcatcaac aacaactggg gcatccgtcc caaagcgatg
3201 cgctttagac tctttaacat ccaggttaaa gaggtcacgg tccaagactt
3251 caacaccacc atcggcaaca acctcaccag tacggtccag gtctttgcgg
3301 acaaggacta ccaactgccg tacgtcctcg gatcggctac cgaaggcacc
3351 ttcccgccgt tcccagcgga tatctacacg atcccgcagt acgggtactg
3401 cacgctaaac tacaacaacg aggcggtgga tcgttcggcc ttctactgtc
3451 tggactactt tccctcagac atgctgcgga caggaaataa ctttgagttt
3501 acttacacct tcgaggacgt tcctttccat agcatgtttg cccacaacca
3551 gacgctagac cggctgatga atcccctcgt ggatcagtac ctctgggctt
3601 tcagctccgt cagccaagca ggctcatctg gacgagctct tcattactcg
3651 cgggcgacta aaaccaacat ggcggctcaa tataggaact ggttacctgg
3701 gcctttcttc cgtgatcagc aaatctttac gggcgctagc aacatcacta
3751 aaaataacgt ctttagcgtt tgggaaaaag gcaagcaatg ggaactcgac
3801 aatcggacca acctaatgca gcccggtcct gcggcagcga ccacctttag
3851 cggagaacct gaccgtcaag ccatgcaaaa cacgctggct tttagcagga
3901 ccgtctacga tcaaacgacc gccacgaccg atcgtaacca gatactcatc
3951 accaacgaag acgaaatcag acccaccaac tcggtcggta tcgacgcgtg
4001 gggagcagtt cccaccaaca accagtcgat cgtgaccccc ggcactcgcg
4051 cggccgtcaa caatcaaggg gcgcttcccg ggatggtgtg gcaaaacaga
4101 gacatttacc ctacagggac ccatttggcc aaaattcccg acactgacaa
4151 tcacttccat ccgtccccgc ttattgggcg gtttggctgc aagcatcccc
4201 ctccccagat tttcattaaa aacacacccg tccctgccaa cccttcggaa
4251 acgttccaga cggccaaagt ggcctccttc atcaaccagt actcgaccgg
4301 acagtgcacc gtcgaaatct tttgggaact caagaaggaa acctccaagc
4351 gctggaaccc cgaaatccag ttcacctcca actttggcaa cgcggccgac
4401 atccagtttg ccgtctccga cacgggatcc tattccgaac ctcgtcccat
4451 cggtacccgt taccttacca aacctctgta aattaaaccc ttcaataaac
4501 cgtttatgcg taactgtatt tccgtctcct gtcgttattc agtcacatga
4551 tgcggcatta cctcaccgga gtgctggcca gtttccaaga caggctcgct
4601 cgctcactcg ggccggggcc ccaaaggggc ccctagcgac cgcttcgcgg
4651 tcgcggcccg agtgagcgag cgagcctgtc ttggaaactg gcca